genome.fa.s14476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014476.1 Kokia drynarioides strain JFW-HI SEQ_129515, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  323745

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940--987	24	1.9	26	84	16	66	45	0	22	31	1.53
1050--1176	23	5.5	23	76	12	93	12	24	23	39	1.89
2033--2073	22	1.9	22	90	5	66	68	4	0	26	1.10
7674--7703	5	6.0	5	100	0	60	0	20	20	60	1.37
14711--14741	2	15.5	2	93	0	53	48	48	3	0	1.17
21360--21441	32	2.6	31	79	9	85	37	3	8	50	1.51
22149--22218	29	2.4	29	83	6	88	47	1	2	48	1.25
27013--27071	27	2.2	27	80	11	68	35	1	1	61	1.16
31231--31260	2	15.0	2	100	0	60	50	0	0	50	1.00
35148--35203	23	2.5	21	83	13	76	48	0	0	51	1.00
35148--35215	24	2.9	24	85	10	79	44	0	2	52	1.16
37584--37618	2	17.5	2	100	0	70	48	0	0	51	1.00
40153--40370	112	1.9	112	82	8	262	38	15	18	27	1.91
42213--42240	2	14.0	2	100	0	56	50	0	0	50	1.00
56802--56873	25	2.8	25	95	2	126	11	29	20	38	1.87
59698--59722	12	2.1	12	100	0	50	0	8	0	92	0.40
60945--60975	16	2.0	15	93	6	53	77	0	0	22	0.77
68137--68190	27	2.0	27	88	0	81	16	33	12	37	1.87
71518--71558	23	1.9	21	85	14	57	46	0	0	53	1.00
77826--78000	47	3.7	47	89	2	242	33	5	17	44	1.71
77826--78022	47	4.2	45	85	6	207	32	6	18	42	1.75
82058--82095	18	2.1	18	85	9	51	73	7	2	15	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82810--82888	36	2.2	36	100	0	158	30	20	18	30	1.97
85611--85649	15	2.6	15	83	0	51	79	5	2	12	1.00
88100--88135	15	2.3	16	90	4	56	66	0	5	27	1.13
90895--90932	14	2.6	15	84	16	53	65	0	7	26	1.19
96560--96618	32	1.9	31	86	10	86	37	3	1	57	1.25
107270--107488	108	2.0	108	94	0	384	26	26	15	31	1.95
112037--112092	29	1.9	29	88	0	85	42	10	3	42	1.56
120158--120228	29	2.4	30	85	4	90	26	12	11	49	1.74
121049--121092	14	2.8	16	80	16	56	47	0	0	52	1.00
133775--133848	26	2.8	27	81	4	96	41	2	1	54	1.23
133805--133849	18	2.3	20	77	14	58	44	2	2	51	1.26
133770--133855	26	3.2	26	75	15	86	38	2	1	58	1.19
133775--133858	27	3.1	27	78	13	93	40	2	1	55	1.20
134311--134373	27	2.3	27	75	0	72	46	4	3	46	1.40
138658--138683	6	4.3	6	100	0	52	0	15	0	84	0.62
140307--140346	6	6.5	6	86	13	55	32	2	0	65	1.06
144849--144887	20	2.0	20	89	0	60	25	5	23	46	1.73
156138--156176	19	2.1	19	85	9	53	23	35	10	30	1.88
159069--159096	2	14.0	2	100	0	56	50	0	0	50	1.00
196840--198199	339	4.0	338	94	0	2236	24	28	14	33	1.94
199358--199403	16	2.9	16	83	0	56	80	2	13	4	0.95
202058--202096	20	2.0	19	85	5	51	41	5	5	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202322--202353	17	1.9	17	93	6	57	75	0	0	25	0.81
203644--203673	5	6.0	5	100	0	60	0	0	60	40	0.97
203899--203943	24	2.0	22	82	8	54	31	6	0	62	1.21
205596--205631	16	2.3	16	90	4	56	38	0	0	61	0.96
205937--205995	29	2.0	29	83	3	73	44	5	5	45	1.47
208381--208426	16	2.9	16	83	0	56	80	2	13	4	0.95
211081--211119	20	2.0	19	85	5	51	41	5	5	48	1.47
211345--211376	17	1.9	17	93	6	57	75	0	0	25	0.81
212667--212696	5	6.0	5	100	0	60	0	0	60	40	0.97
212922--212966	24	2.0	22	82	8	54	31	6	0	62	1.21
214619--214654	16	2.3	16	90	4	56	38	0	0	61	0.96
214960--215018	29	2.0	29	83	3	73	44	5	5	45	1.47
225335--225416	31	2.8	29	81	3	83	40	12	10	36	1.78
226648--226685	2	19.0	2	100	0	76	50	0	0	50	1.00
226650--226702	22	2.5	20	84	9	61	45	0	1	52	1.11
227546--227593	24	2.0	24	83	4	60	58	18	2	20	1.49
227653--227695	21	2.0	21	90	9	68	74	0	0	25	0.82
227652--227712	31	1.9	32	86	3	88	70	0	1	27	0.97
227653--227697	23	2.0	23	86	8	65	73	0	0	26	0.84
236211--236236	1	26.0	1	100	0	52	100	0	0	0	0.00
246441--246465	1	25.0	1	100	0	50	0	0	0	100	0.00
247667--247705	19	2.1	19	100	0	78	33	5	20	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248009--248148	54	2.6	54	97	0	262	44	6	15	34	1.71
248570--248624	23	2.4	23	93	0	101	12	20	29	38	1.89
259845--259876	16	1.9	17	93	6	57	34	0	3	62	1.11
259845--259968	9	13.8	9	71	19	82	32	2	2	62	1.21
259919--259962	21	2.2	20	83	4	52	36	2	2	59	1.23
259846--259967	63	2.0	62	82	8	149	32	2	2	62	1.22
259770--259968	17	11.2	17	67	21	65	32	2	3	61	1.24
260093--260127	15	2.3	15	90	0	52	48	11	5	34	1.63
260383--260416	7	4.7	7	96	3	59	82	0	2	14	0.79
260381--260416	14	2.5	15	90	9	65	80	0	5	13	0.88
269878--269932	25	2.2	25	78	9	60	49	7	0	43	1.30
287667--287994	163	2.0	163	90	1	514	26	17	14	41	1.88
295195--295303	22	4.9	22	68	22	57	54	2	2	40	1.29
295325--295414	29	3.1	29	72	12	85	31	1	1	66	1.06
295309--295412	29	3.6	29	76	17	83	31	0	1	65	1.10
295320--295414	31	3.2	29	75	22	92	31	1	1	66	1.06
295770--295824	24	2.3	25	78	12	62	50	1	0	47	1.11
297249--297295	15	3.2	15	78	6	51	63	0	4	31	1.13
297654--297826	56	3.1	57	81	7	180	31	16	8	43	1.78
298094--298211	57	2.1	56	81	10	134	41	8	15	34	1.77
298119--298226	57	1.9	57	81	7	130	43	10	17	28	1.82
301087--301123	18	2.1	18	89	0	56	54	0	5	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302463--302511	22	2.3	21	77	16	57	40	0	4	55	1.19
303808--303847	21	2.0	20	86	13	57	50	2	0	47	1.14
304212--304257	21	2.1	21	84	8	56	45	2	0	52	1.13
304242--304309	30	2.2	31	84	2	84	47	1	7	44	1.40
308578--308620	23	1.9	23	90	4	70	69	0	2	27	1.00
316340--316386	19	2.5	19	79	6	51	46	0	2	51	1.13
319791--319845	23	2.4	23	88	8	78	32	3	20	43	1.69

Tables:   1

The End!