genome.fa.s14477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014477.1 Kokia drynarioides strain JFW-HI SEQ_129516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219697

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471--4597	51	2.5	50	87	2	173	31	14	23	30	1.94
7361--7422	30	2.0	31	87	3	90	40	20	16	22	1.91
8143--8169	14	1.9	14	100	0	54	3	7	7	81	0.97
8142--8175	14	2.4	14	85	5	50	2	8	11	76	1.12
9210--9267	24	2.5	23	78	10	64	50	0	1	48	1.11
9461--9526	26	2.5	26	72	18	73	37	19	6	36	1.77
24454--24482	12	2.5	12	94	5	51	6	0	37	55	1.27
36138--36220	41	2.0	41	95	0	148	32	18	8	40	1.80
36142--36229	41	2.3	37	84	11	108	30	19	10	39	1.85
49612--49649	18	2.1	18	85	9	51	26	21	26	26	1.99
50921--50966	21	2.1	21	84	11	58	73	8	6	10	1.23
62007--62041	17	2.1	17	100	0	70	65	5	22	5	1.36
68004--68069	26	2.7	24	71	13	62	27	4	3	65	1.27
73084--73360	52	5.3	52	83	5	344	25	13	23	37	1.92
86319--86352	17	2.1	16	88	5	50	32	0	2	64	1.08
88497--88596	38	2.6	39	71	12	98	22	19	28	31	1.97
90789--90839	24	2.1	24	100	0	102	23	11	7	56	1.61
91363--91401	18	2.2	18	86	9	53	35	12	23	28	1.91
92797--92847	24	2.1	24	92	0	84	23	11	7	56	1.61
95599--95648	19	2.6	19	78	12	57	38	4	6	52	1.45
96058--96214	80	2.0	80	88	0	233	46	15	9	28	1.77
97101--97141	22	1.9	21	85	5	55	60	4	4	29	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98329--98359	3	10.3	3	100	0	62	67	0	32	0	0.91
107071--107104	2	17.5	2	93	6	61	50	0	0	50	1.00
110419--110453	10	3.5	10	88	0	52	45	0	0	54	0.99
110427--110490	20	3.3	20	78	4	60	45	1	3	50	1.27
112867--112947	39	2.1	39	100	0	162	20	4	17	56	1.59
120099--120355	41	6.2	41	87	3	313	38	9	24	27	1.86
122127--122182	24	2.3	24	79	11	62	48	0	5	46	1.25
126082--126161	30	2.6	32	82	5	94	22	7	16	53	1.67
129800--129842	21	2.0	21	82	8	52	30	9	4	55	1.52
130162--130208	20	2.4	19	79	10	51	74	4	2	19	1.09
130815--130844	2	15.0	2	100	0	60	50	0	50	0	1.00
132625--132658	15	2.3	15	89	0	50	8	17	8	64	1.47
136226--136273	23	2.1	23	92	0	78	47	18	20	12	1.81
140768--140813	15	3.1	15	83	0	65	45	8	26	19	1.79
143642--143699	28	2.1	29	87	6	84	34	18	13	32	1.91
143642--143850	83	2.5	83	82	3	197	30	14	17	37	1.90
143656--144044	28	13.9	29	75	11	253	25	14	22	37	1.93
143668--144062	84	4.7	83	76	9	311	26	14	21	36	1.93
146152--146194	20	2.2	20	82	0	50	32	4	0	62	1.15
153737--153766	15	2.0	15	100	0	60	0	0	33	66	0.92
154370--154421	17	2.9	19	68	26	58	19	23	7	50	1.73
157081--157261	51	3.5	51	85	1	220	30	16	23	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160596--160634	20	2.0	20	94	0	69	53	0	7	38	1.30
160688--160717	2	15.0	2	100	0	60	50	0	0	50	1.00
176549--176595	11	4.0	11	84	15	67	19	25	0	55	1.43
176549--176610	25	2.5	25	94	2	108	20	20	1	56	1.51
176558--176602	14	3.4	14	82	17	69	22	20	0	57	1.40
177260--177360	52	1.9	52	91	0	166	25	12	24	36	1.91
177334--177390	30	1.9	30	100	0	114	24	22	24	28	2.00
177283--177439	82	1.9	82	93	0	269	26	15	23	34	1.94
177364--177651	52	5.6	52	90	1	454	26	14	24	34	1.94
180322--180398	38	2.0	38	100	0	154	38	10	7	42	1.68
181260--181305	21	2.2	21	81	14	51	76	4	8	10	1.15
181269--181324	29	1.9	29	82	7	69	80	8	3	7	1.01
185444--185502	8	6.7	9	74	16	52	71	1	0	27	0.96
185451--185503	19	2.9	19	86	5	74	69	1	0	28	0.99
185444--185507	10	7.5	8	74	22	51	71	1	0	26	0.94
185467--185520	25	2.1	25	83	10	65	70	0	1	27	0.98
189156--189325	83	2.0	83	97	0	322	49	12	20	17	1.79
196777--196828	24	2.2	24	89	0	77	34	3	7	53	1.48
197416--197479	30	2.1	30	94	0	110	40	12	14	32	1.83
202257--202298	21	2.0	21	95	0	75	69	4	0	26	1.08
202257--202304	21	2.3	21	89	3	62	68	4	0	27	1.07
202484--202756	119	2.3	118	79	10	281	35	6	20	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202484--202749	30	8.9	30	80	7	231	35	6	21	36	1.80
202642--202766	60	2.1	60	80	3	135	42	6	18	32	1.76
204048--204079	12	2.7	12	90	0	55	53	12	6	28	1.62
205642--205748	53	2.0	53	94	0	187	26	9	14	49	1.74
210696--210884	102	1.9	102	95	0	342	23	22	21	31	1.98
214382--214955	290	2.0	290	95	0	1022	25	24	14	35	1.93
217998--218040	18	2.3	20	88	11	65	67	11	0	20	1.22
218008--218050	18	2.5	17	82	14	52	69	6	0	23	1.12
218210--218455	30	8.3	30	78	8	202	36	3	21	38	1.71
218210--218455	58	4.2	57	80	10	228	36	3	21	38	1.71
218209--218485	88	3.1	86	78	8	243	36	3	20	38	1.70
218342--218495	58	2.6	60	81	10	190	40	3	16	39	1.64
218256--218495	30	8.1	30	81	10	185	36	2	20	40	1.67
218920--218975	17	3.4	16	80	7	67	44	1	1	51	1.22
219008--219056	15	3.3	15	91	0	80	40	28	14	16	1.87
219595--219633	3	13.0	3	100	0	78	66	0	0	33	0.92

Tables:   1

The End!