Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014483.1 Kokia drynarioides strain JFW-HI SEQ_129522, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3062
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39


Found at i:82 original size:22 final size:24

Alignment explanation


    Indices: 37--83  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         27 TTATTTGGAC

                               *    
         37 ATATTAAAAATTATTAATATAAAT
          1 ATATTAAAAATTATTAATAAAAAT

                   *                
         61 ATATTAACAA-TATT-ATAAAAAT
          1 ATATTAAAAATTATTAATAAAAAT

             
         83 A
          1 A

         84 AAGAGAAGAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22    8  0.38
  23    4  0.19
  24    9  0.43

ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38


Consensus pattern (24 bp):   
ATATTAAAAATTATTAATAAAAAT

Found at i:84 original size:26 final size:24

Alignment explanation


    Indices: 37--85  Score: 62
    Period size: 26  Copynumber: 2.0  Consensus size: 24

         27 TTATTTGGAC

                          *  *      
         37 ATATTAAAAATTATTAATATAAAT
          1 ATATTAAAAATTATAAAAATAAAT

                                     
         61 ATATTAACAATATTATAAAAATAAA
          1 ATATTAA-AA-ATTATAAAAATAAA

         86 GAGAAGAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    7  0.33
  25    2  0.10
  26   12  0.57

ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37


Consensus pattern (24 bp):   
ATATTAAAAATTATAAAAATAAAT

Found at i:1261 original size:22 final size:24

Alignment explanation


    Indices: 1216--1262  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1206 TTATTTGGAC

                               *    
       1216 ATATTAAAAATTATTAATATAAAT
          1 ATATTAAAAATTATTAATAAAAAT

                   *                
       1240 ATATTAACAA-TATT-ATAAAAAT
          1 ATATTAAAAATTATTAATAAAAAT

             
       1262 A
          1 A

       1263 AAGAGAAGAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22    8  0.38
  23    4  0.19
  24    9  0.43

ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38


Consensus pattern (24 bp):   
ATATTAAAAATTATTAATAAAAAT

Found at i:1263 original size:26 final size:24

Alignment explanation


    Indices: 1216--1264  Score: 62
    Period size: 26  Copynumber: 2.0  Consensus size: 24

       1206 TTATTTGGAC

                          *  *      
       1216 ATATTAAAAATTATTAATATAAAT
          1 ATATTAAAAATTATAAAAATAAAT

                                     
       1240 ATATTAACAATATTATAAAAATAAA
          1 ATATTAA-AA-ATTATAAAAATAAA

       1265 GAGAAGAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    7  0.33
  25    2  0.10
  26   12  0.57

ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37


Consensus pattern (24 bp):   
ATATTAAAAATTATAAAAATAAAT
Done.