genome.fa.s14485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014485.1 Kokia drynarioides strain JFW-HI SEQ_129524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258484

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8965--9235	29	9.2	29	72	15	116	34	5	25	35	1.78
8980--9177	88	2.2	88	81	5	222	35	5	23	35	1.78
9009--9410	88	4.5	88	77	13	312	34	2	26	36	1.72
9010--9439	30	14.6	29	75	12	328	34	2	25	36	1.71
9012--9439	59	7.3	60	80	6	355	35	2	25	36	1.71
11176--11243	35	2.0	34	85	2	91	54	8	4	32	1.51
20891--20962	35	2.1	35	84	5	92	58	6	5	29	1.47
26893--26941	17	2.7	19	81	9	66	59	2	4	34	1.28
26902--26956	19	3.1	18	82	7	58	54	3	3	38	1.36
30482--30522	19	2.1	19	86	4	55	39	0	31	29	1.57
31617--31658	2	21.5	2	95	4	77	50	0	0	50	1.00
36891--37993	454	2.4	459	91	2	1816	35	18	11	34	1.86
37898--38082	89	2.1	89	96	1	345	43	15	7	32	1.75
47170--47348	26	6.9	26	71	7	121	32	19	20	26	1.97
47170--47348	52	3.5	51	75	11	159	32	19	20	26	1.97
51742--51828	43	2.0	43	93	0	147	33	11	28	26	1.91
54444--54659	26	8.3	26	84	0	234	33	18	20	26	1.96
57089--57135	19	2.5	19	82	3	60	19	23	12	44	1.85
58911--58998	39	2.3	39	90	4	133	37	25	4	32	1.76
66461--66519	26	2.3	26	75	0	64	25	18	13	42	1.87
66778--66806	9	3.0	10	90	10	51	20	20	0	58	1.39
68527--68581	28	2.0	28	92	0	92	23	29	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68555--68649	36	2.6	36	91	3	147	25	27	12	34	1.92
69723--69764	20	2.2	19	83	12	50	38	16	2	42	1.61
70521--70554	14	2.3	15	90	5	52	50	11	0	38	1.39
74292--74322	2	15.5	2	100	0	62	51	0	0	48	1.00
76488--76523	11	3.2	11	88	4	54	86	0	13	0	0.58
76488--76531	11	4.1	10	82	11	52	84	2	13	0	0.73
76488--76526	5	7.4	5	85	8	51	84	0	15	0	0.62
77022--77048	2	13.5	2	100	0	54	51	0	48	0	1.00
88722--88846	23	5.5	22	82	5	90	41	25	21	11	1.86
88694--88866	46	3.7	44	75	11	150	42	23	23	11	1.86
88790--88866	23	3.3	23	92	0	127	45	20	23	10	1.82
92538--92563	9	2.9	9	100	0	52	11	0	0	88	0.52
93039--93083	23	2.0	23	86	0	63	44	17	31	6	1.75
112430--112470	6	6.3	7	86	13	61	0	26	0	73	0.84
112428--112470	13	3.5	13	87	6	63	0	25	0	74	0.82
132733--137391	679	6.9	679	81	4	4565	38	16	13	31	1.88
139528--139561	17	2.0	17	100	0	68	52	17	17	11	1.73
146661--146697	15	2.4	16	78	17	51	21	18	13	45	1.84
150292--150329	17	2.2	17	86	9	51	34	2	5	57	1.35
153316--153374	31	1.9	31	96	0	109	44	11	11	32	1.78
156435--156502	31	2.2	31	86	0	91	41	10	13	35	1.78
159559--159750	51	3.8	51	86	1	251	29	23	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159513--159750	102	2.3	103	84	4	284	29	23	14	32	1.94
176506--176898	198	2.0	198	97	0	750	29	10	20	38	1.87
177606--177645	21	1.9	21	90	10	64	67	7	15	10	1.41
181079--181111	13	2.5	13	86	13	50	0	15	0	84	0.61
187805--187834	14	2.2	14	94	5	53	36	10	23	30	1.87
195356--195380	13	1.9	13	100	0	50	24	16	12	48	1.79
209442--209515	36	2.1	36	100	0	148	36	10	17	35	1.85
219813--219884	17	4.3	17	83	3	92	19	13	8	58	1.61
220905--220940	10	3.9	10	79	20	51	30	0	0	69	0.89
220907--220940	17	2.0	17	100	0	68	29	0	0	70	0.87
229877--229918	21	2.0	21	81	9	50	61	4	0	33	1.17
236234--236416	92	2.0	91	98	0	348	22	19	13	43	1.86
244702--244808	27	4.0	27	86	3	135	17	39	8	34	1.80
246184--246239	27	2.1	27	86	6	78	25	16	0	58	1.37
251919--251968	22	2.2	24	82	13	61	36	6	0	58	1.23

Tables:   1

The End!