genome.fa.s14490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014490.1 Kokia drynarioides strain JFW-HI SEQ_129529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189920

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1680--1704	2	12.5	2	100	0	50	48	0	0	52	1.00
1892--1925	17	2.0	17	88	0	50	50	0	2	47	1.16
3662--4149	123	4.0	123	88	2	662	44	6	10	38	1.63
3884--3930	22	2.2	21	81	11	51	55	2	12	29	1.49
6203--6285	30	2.8	29	81	7	94	37	6	25	31	1.80
6198--6516	61	5.4	59	77	10	233	37	2	24	35	1.69
6268--6516	30	8.4	29	73	12	186	38	1	24	36	1.63
6268--6516	60	4.2	59	77	10	222	38	1	24	36	1.63
6393--6486	31	3.1	30	73	13	93	42	2	17	38	1.61
6827--7002	89	2.0	86	96	3	325	19	31	4	44	1.71
9035--9086	20	2.5	20	82	14	70	44	1	7	46	1.43
16647--16703	6	9.5	6	84	0	60	45	0	29	24	1.53
16647--16703	18	3.2	18	84	0	69	45	0	29	24	1.53
16644--16703	24	2.5	24	100	0	120	46	0	28	25	1.53
16805--16905	38	2.6	39	73	10	98	22	18	27	30	1.98
16803--16909	37	2.8	38	75	5	108	23	17	27	31	1.97
22090--22114	7	3.6	7	100	0	50	44	16	0	40	1.47
22878--22919	19	2.2	20	91	4	68	71	0	0	28	0.86
23405--23523	60	2.0	61	83	8	154	42	5	4	47	1.47
28987--29023	9	4.1	9	89	0	56	10	21	10	56	1.64
31377--31450	32	2.3	32	86	4	96	62	8	4	25	1.41
37970--38082	18	6.3	18	86	4	165	30	25	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37970--38082	54	2.1	54	91	3	183	30	25	22	22	1.99
42273--42455	77	2.3	79	83	2	244	23	18	26	31	1.97
48599--48765	80	2.1	80	86	2	228	24	16	26	31	1.96
57182--57235	21	2.6	21	81	0	72	16	18	25	38	1.92
77335--77397	32	2.0	32	93	0	108	39	17	9	33	1.82
77432--77539	37	2.8	38	87	4	155	50	15	5	28	1.67
79843--79899	31	1.9	28	86	10	78	3	28	1	66	1.18
79874--79922	20	2.4	20	82	3	62	6	22	0	71	1.08
81312--81376	21	3.1	21	100	0	130	13	33	23	29	1.93
84553--84609	31	1.9	28	86	10	78	3	28	1	66	1.18
84584--84632	20	2.4	20	82	3	62	6	22	0	71	1.08
86022--86086	21	3.1	21	100	0	130	13	33	23	29	1.93
87535--87567	10	3.3	10	100	0	66	30	9	42	18	1.81
87860--87922	32	2.0	32	83	0	81	41	15	9	33	1.80
87968--88066	39	2.5	39	90	0	153	53	17	5	24	1.63
88206--88254	24	2.0	24	96	0	89	32	12	24	30	1.92
92386--92432	21	2.2	21	96	0	85	14	14	25	44	1.84
100103--100156	26	2.1	26	85	0	72	29	20	22	27	1.98
103830--104160	165	2.0	165	97	0	626	49	13	6	30	1.66
112301--112333	17	1.9	17	88	11	50	27	15	6	51	1.66
112428--112526	39	2.5	39	90	0	153	25	6	15	53	1.64
112572--112634	32	2.0	32	93	0	108	33	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118949--119047	39	2.5	39	90	0	162	26	5	15	53	1.62
119093--119155	32	2.0	32	93	0	108	33	12	17	36	1.88
147208--147265	28	2.0	28	83	6	71	27	15	25	31	1.96
148717--148799	36	2.3	36	85	0	112	28	25	15	30	1.96
155889--155980	36	2.6	36	82	0	112	26	29	14	30	1.95
157053--157094	21	2.0	21	86	4	59	33	16	0	50	1.46
161058--161121	31	2.1	30	85	2	83	43	4	1	50	1.32
161114--161183	28	2.5	28	86	6	90	42	10	11	35	1.74
161134--161191	28	2.1	28	100	0	116	34	6	13	44	1.71
163802--163836	17	2.1	17	100	0	70	28	25	0	45	1.54
168034--169095	531	2.0	531	96	0	1971	24	22	13	39	1.91
172819--172865	23	2.0	23	100	0	94	38	17	21	23	1.93
174517--174552	18	1.9	19	88	5	56	13	19	0	66	1.24
181307--181350	21	2.1	21	87	8	63	61	13	25	0	1.32

Tables:   1

The End!