genome.fa.s14499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014499.1 Kokia drynarioides strain JFW-HI SEQ_129538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209467

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5781--5820	16	2.4	16	87	4	53	17	7	17	57	1.62
10392--10455	33	1.9	33	90	0	101	48	7	1	42	1.41
10384--10586	103	2.0	103	95	0	363	39	13	9	37	1.78
13912--14220	154	2.0	154	90	0	492	29	14	13	42	1.84
23432--23457	13	2.0	13	100	0	52	30	15	7	46	1.74
39686--39717	2	16.0	2	100	0	64	0	50	0	50	1.00
47369--47419	22	2.3	21	83	6	57	50	1	41	5	1.37
48670--48741	35	2.1	35	97	0	135	43	8	5	43	1.58
56058--56103	13	3.4	14	79	8	51	52	0	0	47	1.00
56515--56547	10	3.3	10	95	0	57	54	0	0	45	0.99
56515--56554	20	2.0	20	85	0	53	57	0	0	42	0.98
59969--60276	80	3.8	80	87	3	381	34	25	18	21	1.96
59969--60276	160	1.9	161	86	5	446	34	25	18	21	1.96
63159--63192	17	2.0	17	100	0	68	23	11	23	41	1.87
64701--64740	19	2.1	19	86	9	55	35	5	5	55	1.44
64719--64777	28	2.0	29	87	6	84	35	5	3	55	1.38
70935--70982	22	2.2	21	79	13	53	41	0	8	50	1.33
70941--70982	22	1.9	22	85	9	59	40	0	7	52	1.29
75791--75901	31	3.7	30	77	8	100	36	10	12	40	1.78
76053--76123	29	2.4	29	78	4	79	40	15	9	33	1.80
84188--84262	31	2.5	31	85	10	93	46	20	12	21	1.82
93284--93575	52	5.6	51	87	5	381	35	20	14	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93284--93575	156	1.9	156	89	1	451	35	20	14	28	1.93
100279--100315	18	2.1	18	89	0	56	24	27	0	48	1.51
104456--104496	20	2.0	20	85	0	55	29	14	2	53	1.54
107019--107071	27	2.0	25	86	13	72	45	3	3	47	1.39
107199--107265	33	2.0	33	100	0	134	38	2	11	46	1.56
107992--108035	23	1.9	23	85	0	61	75	2	0	22	0.92
108013--108050	20	1.9	20	88	0	58	78	0	5	15	0.91
108012--108056	20	2.2	20	80	0	54	77	0	6	15	0.96
111272--111310	22	1.9	20	85	15	53	41	0	5	53	1.23
112324--112358	18	1.9	18	94	0	61	51	0	0	48	1.00
115668--115715	21	2.4	20	75	6	53	60	2	0	37	1.09
126226--126311	22	3.9	21	83	7	100	44	1	2	52	1.21
136119--136255	53	2.6	51	81	7	134	33	15	23	27	1.95
136173--136375	61	3.5	57	81	10	179	31	14	23	30	1.94
136212--136382	61	2.8	60	86	4	229	34	13	21	30	1.92
138032--138106	20	3.8	20	77	13	75	29	12	29	29	1.92
138263--138302	20	2.0	20	90	0	62	25	7	35	32	1.84
140207--140324	39	3.0	39	88	2	157	34	21	20	23	1.96
151116--151172	30	1.9	29	82	10	71	29	21	3	45	1.68
151304--151328	4	6.2	4	100	0	50	52	24	0	24	1.48
152481--152519	20	2.0	20	85	10	53	38	5	0	56	1.22
154389--154413	10	2.5	10	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154855--154885	14	2.2	14	94	0	53	48	0	0	51	1.00
167004--167033	7	4.4	7	91	8	53	33	26	13	26	1.93
172077--172212	50	2.7	50	81	0	182	14	16	34	33	1.90
174694--174835	70	2.0	70	95	0	257	40	11	11	35	1.78
176801--176867	12	5.8	12	71	16	61	71	19	1	7	1.17
176787--176901	21	5.5	20	77	16	99	69	19	2	8	1.26
176852--176924	22	3.3	22	88	3	85	67	21	5	5	1.33
176885--176939	23	2.5	22	78	3	56	67	21	7	3	1.31
184717--184807	36	2.5	35	77	5	94	50	4	0	45	1.21
193235--193428	97	2.0	97	81	6	223	39	14	17	28	1.90
193782--194152	29	12.5	28	71	12	226	41	1	22	33	1.64
193753--194151	60	6.7	59	85	7	526	40	1	23	34	1.65
193749--194151	118	3.4	117	86	7	550	40	1	23	33	1.66
195293--195366	3	24.3	3	83	8	96	33	1	1	63	1.11
196064--196110	11	3.9	11	80	20	58	59	2	0	38	1.09
196062--196164	26	3.5	31	80	18	116	55	3	0	39	1.25
196601--197103	49	10.3	49	72	9	325	15	23	20	40	1.90
196594--197102	98	5.2	98	84	5	601	15	23	20	40	1.91
205336--205408	29	2.5	31	80	17	93	32	23	4	39	1.74
205336--205426	30	3.1	31	77	15	93	32	24	4	38	1.75
205413--205513	29	3.5	29	76	17	95	33	23	9	32	1.88
207698--207738	19	2.0	21	86	9	59	39	0	14	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207771--207812	21	2.0	21	81	9	50	28	4	4	61	1.36

Tables:   1

The End!