Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000145.1 Kokia drynarioides strain JFW-HI SEQ_110800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Found at i:1036 original size:7 final size:7

Alignment explanation


    Indices: 1024--1058  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

       1014 AGTTCTTAGT

                   
       1024 GGATTTA
          1 GGATTTA

                   
       1031 GGATTTA
          1 GGATTTA

            *      
       1038 CGATTTA
          1 GGATTTA

                   
       1045 GGATTTA
          1 GGATTTA

                   
       1052 GGATTTA
          1 GGATTTA

       1059 AAATAATTTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   7   26  1.00

ACGTcount: A:0.29, C:0.03, G:0.26, T:0.43


Consensus pattern (7 bp):   
GGATTTA

Done.