Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014506.1 Kokia drynarioides strain JFW-HI SEQ_129545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4905
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34


Found at i:2439 original size:13 final size:13

Alignment explanation


    Indices: 2421--2445  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2411 GAAAAAATTC

                         
       2421 ATATATGAAAAAA
          1 ATATATGAAAAAA

                        
       2434 ATATATGAAAAA
          1 ATATATGAAAAA

       2446 TAAAGAGGAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24


Consensus pattern (13 bp):   
ATATATGAAAAAA

Found at i:3258 original size:24 final size:24

Alignment explanation


    Indices: 3227--3284  Score: 107
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       3217 AGAAGGAAAT

                                    
       3227 AGATTTTGTTGAAGATGAATAACC
          1 AGATTTTGTTGAAGATGAATAACC

                                    
       3251 AGATTTTGTTGAAGATGAATAACC
          1 AGATTTTGTTGAAGATGAATAACC

             *        
       3275 AAATTTTGTT
          1 AGATTTTGTT

       3285 AGTTTATGTT


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38


Consensus pattern (24 bp):   
AGATTTTGTTGAAGATGAATAACC
Done.