Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014507.1 Kokia drynarioides strain JFW-HI SEQ_129546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3011
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:803 original size:29 final size:30

Alignment explanation


    Indices: 735--796  Score: 115
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        725 TTTCGAAAAA

                                   *      
        735 AGCCATCCAAGTTACACCTTTTTTATTCAT
          1 AGCCATCCAAGTTACACCTTTTTGATTCAT

                                          
        765 AGCCATCCAAGTTACACCTTTTTGATTCAT
          1 AGCCATCCAAGTTACACCTTTTTGATTCAT

              
        795 AG
          1 AG

        797 TCACCAATGT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37


Consensus pattern (30 bp):   
AGCCATCCAAGTTACACCTTTTTGATTCAT
Done.