Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014509.1 Kokia drynarioides strain JFW-HI SEQ_129548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76039
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Warning! 75 characters in sequence are not A, C, G, or T
Found at i:4298 original size:48 final size:48
Alignment explanation
Indices: 4229--4398 Score: 259
Period size: 48 Copynumber: 3.5 Consensus size: 48
4219 TTAATGCAAG
* * *
4229 GCATTTAACGAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
* *
4277 GCATTTAACAAACAAAACAGTTAATAATGCAGATCACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
* *
4325 GCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
*
4373 GCATTTAACAAAAAAAAACACTTAAT
1 GCATTTAAC-AAACAAAACACTTAAT
4399 GAAGCATAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
48 98 0.87
49 15 0.13
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
Found at i:7623 original size:216 final size:215
Alignment explanation
Indices: 6999--7771 Score: 902
Period size: 210 Copynumber: 3.6 Consensus size: 215
6989 TCACCACTAT
* * *
6999 TTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGTCAATCTTTTACGAGTTCTTTCACAACTTC
1 TTCTCTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTC
* *
7064 AGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGG
66 AGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGG
* *
7129 AAATCGCATCATTTGGTCTAAATACTTTTTCATTTTGTAAACAA-GTTTTGGTTTTTGAATTAAA
131 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA-AACGTTTTGGTCTTTGAATTAAA
* * **
7193 AACTTAATTACATGAGAATTGT
195 AACTTATTTACGTGAGAA-TAA
* * * * *
7215 TTCTCTCTTGGTTCTTGCACAAACTTTCGAATTTCTCAAACTTTTACAAGATCTTTCACAACTTC
1 TTCTCTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTC
* * *
7280 AGTTCC----A-TATTCAAGAAGATCCATTCCTTTGAGCAATTTTTTGAACA-TCCATGCTTGGG
66 AGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGG
* *
7339 AAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTACAAAAC-TTTTGGTCTTTGAATTTAA
131 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA-AAAACGTTTTGGTCTTTGAATTAAA
7403 AACTTATTTACGTGAGAATAAA
195 AACTTATTTACGTGAGAAT-AA
* * * * * *
7425 TTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTAAAACTTTAATGAGTTCTTTTATAACTTC
1 TTCTCTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTC
* * * * * * ***
7490 GGTTCCTTAAAGTATTTAAGACGGTCCATTCCTTCAAGCTATTTTCCGAACATTCCACATTTGGG
66 AGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGG
* * **
7555 AAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTGGTAAAAACGTTTTCATCTTTGAATTAAAA
131 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAACGTTTTGGTCTTTGAATT-AAA
* **
7619 AACTTATTTATGTGAGAATTG
195 AACTTATTTACGTGAGAATAA
* * * * ** *
7640 TT-TCTATTGGTTCTTGGACGAACTTCTGAACTTGTCAATTTTTTACGAGTTCTTT-ACAACTTT
1 TTCTCTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTC
* * * * * ** *
7703 GGTTTCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGTAATTTTTCGAATATTTAATGTTTGGG
66 AGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGG
7768 AAAT
131 AAAT
7772 TAAACAATTT
Statistics
Matches: 472, Mismatches: 74, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
209 1 0.00
210 142 0.30
211 40 0.08
212 1 0.00
213 62 0.13
214 51 0.11
215 53 0.11
216 122 0.26
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (215 bp):
TTCTCTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTC
AGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGG
AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAACGTTTTGGTCTTTGAATTAAAA
ACTTATTTACGTGAGAATAA
Found at i:8183 original size:215 final size:214
Alignment explanation
Indices: 7791--8347 Score: 665
Period size: 215 Copynumber: 2.6 Consensus size: 214
7781 TTTCATTTTG
* * * ** *
7791 TAAACAACTTTTTTACGTGAGAATAGTTTTTCCCTTGGTTCTTGGATAAATTTCCAAACATGTCA
1 TAAA-AACTTATTTACGTGAGAATTG-TTTTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCA
* *
7856 AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGGCGGTCCATTCCTTCGAA
64 AATTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGACGGTCCATTCCTTCGAA
* * * *
7921 AAATTTACTAACCATTCCATGCTCGGGAAATCTCATCATTAGGTCTAAATAGTTTGTCATTTTGT
129 AAATTTACGAACCATTCCACGCTCGGGAAATCACATCATTAGGTCTAAATAGTTTGTCA-TTGGT
**
7986 AAAAAAGTTTTGGTCTTTGAAC
193 AAAAAAGTTTTCATCTTTGAAC
* * *
8008 T-AAAACTTATTTACATGAGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * *
8072 ATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAATGCATACAAGACGGTCCATTCCTTC-AAG
65 ATTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGACGGTCCATTCCTTCGAA-
* * * * * * *
8136 CTATTTTGCGAA-CATTCCACGTTTGGGAAATCACATTATTTGGTCTAAATAGTTTGTCATTGGT
129 -AAATTTACGAACCATTCCACGCTCGGGAAATCACATCATTAGGTCTAAATAGTTTGTCATTGGT
* *
8200 AAAAACGTTTTCATCTTTGAAT
193 AAAAAAGTTTTCATCTTTGAAC
* * ** *
8222 TAAAAAACTTATTTATGTGAGAATTG-TTTCTATTGGTTCTTGGACGAACTTCTGAACTTGTCAA
1 T-AAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * * * *
8286 TTTTTTACGAGTTC-TTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGA
65 ATTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGACGGTCCATTCCTTCGA
8348 GTAATTTTTC
Statistics
Matches: 289, Mismatches: 45, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
213 39 0.13
214 72 0.25
215 147 0.51
216 30 0.10
217 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (214 bp):
TAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAA
TTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGACGGTCCATTCCTTCGAAAA
ATTTACGAACCATTCCACGCTCGGGAAATCACATCATTAGGTCTAAATAGTTTGTCATTGGTAAA
AAAGTTTTCATCTTTGAAC
Found at i:8453 original size:608 final size:609
Alignment explanation
Indices: 7200--12627 Score: 4173
Period size: 608 Copynumber: 8.7 Consensus size: 609
7190 AAAAACTTAA
* * * * * * * * * *
7200 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACTTTCGAATTTCTCAAACTTTTACAAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * * ** * * ** *
7265 ATCTTTCACAACTTCAGTTCC----A-TATTCAAGAAGATCCATTCCTTTGAGCAATTTTTTGAA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAAAATTTTCT-AA
* * * * * *
7325 CA-TCCATGCTTGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTACAAAACTTTTG
130 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
* *** * *
7389 GTCTTTGAATTTAAAACTTATTTACGTGAGAATAAATTCTCTCTTGGTTCTTGGACAAACTTCCG
195 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * *
7454 AACTTGTAAAACTTTAATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGGTCCAT
260 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCAT
* *** *
7519 TCCTTCAAGCTATTTTCCGAACATTCCACATTTGGGAAATCGCATCATTTGGTCTAAATAGTTTG
325 TCCTTCAAGCAATTTT-CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* ** *
7584 TCA-TTGGTAAA-AACGTTTTCATCTTTGAATTAAAAAACTTATTTATGTGAGAATTGTTTCTAT
389 TCATTTTGTAAACAA-GTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTAT
* * ** * *
7647 TGGTTCTTGGACGAACTTCTGAACTTGTCAATTTTTTACGAGTTCTTTACAACTTTGGTTTCTTA
452 TGGTTCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTTCTTTATAACTTTGGTTCCTTA
* * * *
7712 AAGTATTCAAGACGATCCTTTCCTTCGAGTAATTTTTCGAATATTTAATGTTTGGGAA-AT-TAA
517 AAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTTAATGCTCGGGAATATCTAA
*
7775 ACAATTTTTCATTTTGTAAACAACTTTT
582 ACAGTTTTTCATTTTGTAAACAACTTTT
* ** * *
7803 TTACGTGAGAATAGTTTTTCCCTTGGTTCTTGGATAAATTTCCAAACATGTCAAACTTTTACGAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * * *
7868 TTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGGCGGTCCATTCCTTCGAAAAATTTACTAAC
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAAAATTTTCTAA-
* * *
7933 CATTCCATGCTCGGGAAATCTCATCATTAGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
130 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
* * * *
7998 GTCTTTGAACT-AAAACTTATTTACATGAGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCA
195 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * * *
8062 AACATGTCAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAATGCATACAAGACGGTCCAT
260 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCAT
* * * * * *
8127 TCCTTCAAGCTATTTTGCGAACATTCCACGTTTGGGAAATCACATTATTTGGTCTAAATAGTTTG
325 TCCTTCAAGCAATTTT-CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* ** *
8192 TCA-TTGGTAAA-AACGTTTTCATCTTTGAATTAAAAAACTTATTTATGTGAGAATTGTTTCTAT
389 TCATTTTGTAAACAA-GTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTAT
* * ** *
8255 TGGTTCTTGGACGAACTTCTGAACTTGTCAATTTTTTACGAGTTCTTTACAACTTTGGTTCCTTA
452 TGGTTCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTTCTTTATAACTTTGGTTCCTTA
* * * *
8320 AAGTATTCAAGACGATCCTTTCCTTCGAGTAATTTTTCGAATATTTAATGTTTGGGAA-AT-TAA
517 AAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTTAATGCTCGGGAATATCTAA
8383 ACAGTTTTTCATTTTGTAAACAACTTTT
582 ACAGTTTTTCATTTTGTAAACAACTTTT
* ** * *
8411 TTACGTGAGAATAGTTTTTCCCTTGGTTCTTGGATAAATTTCCAAACATGTCAAACTTTTACGAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * * * *
8476 TTCTTTTATAACTTTGGTTCCTTAAAGTATACAAGGCGGTCCATTCCTTC-AAGTAATTTTTTGA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA-AAATTTTCT-A
* *
8540 ACATTCCACT-CTCGGGAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTT
129 ACATTCCA-TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTT
* *
8604 TGGTCTTTGAATTAAAAAACTTATTTATGTGAGAATTG-TT-TC-ATTGGTTCTTGGACGAACTT
193 TGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * *
8666 TTAAACTTGTCAAAGTTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAA-TGTTCAAGACGAT
257 CCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGGT
* * * ** * * *
8730 CCTTTCCTTCGAGCAATTTTCTAAACATTTAATGCTCGGGAAATTGCATCATTTCGTCTAAAAAG
321 CCATTCCTTCAAGCAATTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * *
8795 TTTTTCATTTTGTAAACAA--------C-------T------TT-TTTACGTGAGAATTGTATAT
385 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
8838 ATTGGTTCTTGGACAAACTTCCAAACTTTTAAAACTTTTATGAGTTCTTTTATAACTTTGGTTCC
450 ATTGGTTCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTTC-TTTATAACTTTGGTTCC
* * * *
8903 TTAAATTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCTGAATATTTCAA-GCTCGGGAAAT
514 TTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTC-GAACATTT-AATGCTCGGG-AA-
*
8966 CGCGTCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATT
575 ----T-A-----TCTAAACAGTTTTTCATTTTGTAAACAA--------C-------T------TT
9031 AT
609 -T
* * ** *
9033 TTACGTGAGAATAGTGTCTCTCTTGGTTCTTGGACGAACTTCCAAACAAGTCAAACTTTTATGAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* ** * * * * * *
9098 TTCTTTTATTACTTCAGTTCCTTAAAGTATTCAAGGCTATACATTCCTTCGAGCAATTTTTCGAA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-AAAATTTTCTAA
* * * * *
9163 CATTTCATACTCGAGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTCTG
130 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
* * *
9228 GTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCAA
195 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * * *
9293 AACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACAGTCGAT
260 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCAT
* * ** *
9358 TCCTTCAATCAATTTTTCGAACATTCCATGTTTAGGAAATCGCATCATTTGATCTAAATAGTTT-
325 TCCTTCAAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * * *
9422 TCCATTTTGTAAACAAGTTTTGGTCTTTAAATTTAAAACTTATTTACGCGAGAATAGTATATATT
389 T-CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATT
* * *
9487 GGTTCTTGGACGAACTTCCAAAATTGTAAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTA
453 GGTTCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTT-CTTTATAACTTTGGTTCCTTA
* * * * * *
9552 AAGTATTCAAGACAATCCATTCCTTCAAGCAATTTTTTGAACATTCAACGCTCAGGAAATCGCAT
517 AAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTTAATGCTC-GG-----G-A-
* * *
9617 CATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAATTTTGGTCTTTGAATTACAAAACTTAT
574 -A--T-ATCTAAACAGTTTTTC-------------ATTTT-G----T-AA--AC--AACTTTT
* * * ** * *
9680 TTACGTGAGAATCG--TTTCTATTGGTTCTTGGATGAACTTCTGAACTTGTCATAGTTTTACGAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * * * *
9743 TTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT-CATTTCCTTTGAGCAATTTTTCGA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGA-AAAATTTTCTA
** * * * *
9807 ACATTTAATGCTCAAGAGAAATTGCATCGTTTGGTCTAAAAAGTTTTTCATTTTGT---AAA---
129 ACATTCCATGCTC--GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTT
* * ** * *
9866 -----C-----------AACTTTTTTACGTAAGAAAAGTTTCTCTCTTGGTCCTTGGGCGAACTT
192 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * * * * * *
9915 CCGAACTTTTGAAACTTTTATGAATTCTTTTGTAACTACAGTTCCTTAAAGTATTCAAGATGATA
257 CCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTC
* * * *
9980 CATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGT
322 CATTCCTTCAAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
10045 TTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTGAGAATACT-TTCT
386 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT--TGTT-T
* * * * *
10109 CTCTTGGTTCTTGGATGAACTT-TCGAACTCGTAAAACTTTTACGAGTTCTTTTATAACTTCGGT
448 CTATTGGTTCTTGGACGAACTTCT-AAACTTGTAAAACTTTTACGAGTTC-TTTATAACTTTGGT
* * * *
10173 TCCTTAAAGTATTCAAGATGATCCATTCCTTCGAG-AA---ATCGCATCATTTGGTCTAAATAGT
511 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCG-AACA--T--T-T-AAT-GC
* ** * * * * *
10234 TTGTCATTTTGTAAACAAGTTTTGGTC-TTTCAAT-TTAA-AACTTAT
568 TCGGGAATATCTAAAC-AGTTTT--TCATTT---TGTAAACAACTTTT
* * * * *
10279 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTGTCAAACTTTTACAAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * **
10344 TTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AATCATTTTTTCTA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA--AAATTTTCTA
* * * *
10408 ACATTCCATGCTCGAGAAATCGCATTATTTGGTCGAAATAGTTT-TCCATATTGTAAACAAGTTT
129 ACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAAAAAGTTT
* * * *
10472 TGGTCTTTGAATTTAAAAACTTATTTACGTGAGAATTG--TATATATTGGTTCTTGGACAAACTT
193 TGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
10535 CCGAACTTGTAAAACTTTTATGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTAAAGACAGTC
257 CCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTC
* **
10600 CATTCCTTCAAGCAATTTTTTGAACATTCCACACTCGGGAAATCGCATCATTTGGTCTAAATAGT
322 CATTCCTTCAAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
10665 TTGTTATTTTCTAAAAAAGTTTTGGTCTTTGAATTACAAAACTTATTTACGTGAGAATCGTTTCT
386 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCT
* * * * * *
10730 ATTGGTTCTTGGACGTACTTTTAAACTTGTCAAAGTTTTACGAGTTCTTT-T-A--TAGGTTTCT
450 ATTGGTTCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTTCTTTATAACTTTGGTTCCT
* * * *
10791 TAAAGTATTCAAGACGAT-CATTTCCTTTGA-TCAATTTTCCAAACATTTAATGCTCGAGAAATT
515 TAAAGTATTCAAGACGATCCA-TTCCTTCGAGT-AATTTTTCGAACATTTAATGCTCG-GGAA-T
*
10854 GCATCGTTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT
576 --A--------TCTAAACAGTTTTTCATTTTGTAAACAACTTTT
* * * * * *
10898 TTACATGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTTTAAAACTTTTACGAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
** * ** *
10963 TTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGTAATTTTTTGAA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAAAATTTTCT-AA
* * * * * **
11028 CATTTCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTTTTTCACCTTT-TAAACAACATTT
130 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAAAAAGTTTT
** * **
11092 GG---TT-AATTAAAAACTTATTTACGTGAGAATACTTTCACTCTTGGTTCTTGGACGAACTTTT
194 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * * * *
11153 GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT-CTCGAAAGTATTCAAGATGATCC
259 AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACGGTCC
* * * *
11217 ATTCTTTTAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTT
323 ATTCCTTCAAGCAATTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
11282 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTTAAAATTTATTTACGCGAGAATTGTTTCTCT
387 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCT
* * * * *
11347 CTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCATTTATAACTTTGATTCC
450 ATTGGTTCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTTC-TTTATAACTTTGGTTCC
* * * * * *
11412 TTAAAGTATTCAAGACGGTTCATTCCTTCGAATAATTTTCCAAACATTCT-ATGCTGGGGAAATC
514 TTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATT-TAATGCTCGGG--A--
* *
11476 GCATCATTTGCTCTAAATAGTTTTTCAATTTGTAAACAAGTTTTGGTCTTTGAAT
574 --AT-A-----TCTAAACAGTTTTTCATTTTGTAAACAA--------CTTT---T
** * * * * * * * *
11531 TAAAATATTTTTATAAGAGAATTGTTTCTATTGGTTCTTGGACAAAGTTTCAAACTTGTCAAAAT
1 T----TA-CGTGAGAATAG--TT-TTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACT
* * * * * * * **
11596 TTTTCGAGTTCTATTATAACTTCGATTCCTTAAAGCATTCAAGACGATCCTTTCCTCCGAGCAAT
58 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAAAAT
* * ** *
11661 TTTTTGAAAATTCCATGCTCGAGAAATCATATCATTT-TTCTAAA-ACGTTTGTCATTTTGTAAA
123 TTTCT-AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAA
* ***** * *
11724 CAAGTCAAACTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCAC
186 AAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * *
11789 GAACTTCTAAACATGTCAAACTTTTACGAGGTT-TTTTATAACTTTGGTTCCTTAAAGTATTTAA
251 GAACTTCCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * *
11853 GACGGTCCATTCCTT-AGAGCAATTTTCGGAACATTCCAAGCTCAGGAAATCGCATCAAATT-GT
315 GACGGTCCATTCCTTCA-AGCAATTTTC-GAACATTCCATGCTCGGGAAATCGCATC-ATTTGGT
* * *
11916 CTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTATAAACTTATTTAAGTGAGAA
377 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
11981 TTATTTCTTTCTTGGTTCTTGGAAGAACTT-TCAAACTAT-TAAAACTTTTACGAGTTCCTTTAT
442 TTGTTTC--TATTGGTTCTTGGACGAACTTCT-AAACT-TGTAAAACTTTTACGAGTT-CTTTAT
* * * * * * *
12044 AACTTCGGTTCCTTAAAGAATTTAAAACGATCCATTCCTTCGAGCAATTTTCCGAACATTTCATG
502 AACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTTAATG
* *
12109 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGACTTTGAA
567 CTCGGG--A----AT-A-----TCTAAACAGTTTTTCATTTTGT-----A-----A-AC------
*
12174 TTAAAAACTTAT
603 -----AACTTTT
* * * * * *
12186 TTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACATGTCAAACATTTACGAG
1 TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * * *
12251 TTCTTTTATAA-TTTAGGTTCCTTAAAGTATTCAAGACGGTCCTTTCCTTCGAGAAATTTTCCAA
66 TTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAAAATTTT-CTA
* * * *
12315 ACATTCCATGC-CTAGGAAATCGCATCATTTTGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
129 ACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTT
* * * * * **
12379 TGGTCTTT-AAGTTAAAAACTTTTTTA-GTGAG-A-GGTATATCTATTGGTTCTTAAACGAACTT
193 TGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * * *
12440 CTAAACTTTTCAAACTTTTACAAGTTCTTTCATAACTTCGGTTGCTTAAAGCATTTAAGACGATC
257 CCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTC
* * * * ** * *
12505 CTTTCCTTCGAGCAATTTTCCGAACATTCCATGCTCAGGAAATTGCATCATTTTTTTCTAAAAAT
322 CATTCCTTCAAGCAATTTT-CGAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAG
* * * *
12570 TTTGTCAATTTGTAAACAAGTTTTGCTCTTTCAATTAAAAGCTTATTTACGTGAGAAT
385 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
12628 CGTGATGCAA
Statistics
Matches: 3955, Mismatches: 582, Indels: 533
0.78 0.11 0.11
Matches are distributed among these distances:
585 61 0.02
586 62 0.02
587 4 0.00
593 1 0.00
594 1 0.00
598 1 0.00
599 53 0.01
600 27 0.01
601 104 0.03
602 4 0.00
603 68 0.02
604 1 0.00
605 1 0.00
606 1 0.00
607 128 0.03
608 612 0.15
609 72 0.02
610 25 0.01
611 5 0.00
612 2 0.00
613 3 0.00
614 56 0.01
615 32 0.01
616 160 0.04
617 49 0.01
618 15 0.00
619 213 0.05
620 181 0.05
621 54 0.01
622 279 0.07
623 18 0.00
624 138 0.03
625 201 0.05
626 7 0.00
627 88 0.02
628 1 0.00
630 7 0.00
631 2 0.00
632 1 0.00
633 2 0.00
636 1 0.00
637 2 0.00
638 6 0.00
639 5 0.00
640 22 0.01
641 120 0.03
642 2 0.00
643 6 0.00
644 351 0.09
645 239 0.06
646 196 0.05
647 177 0.04
648 49 0.01
649 2 0.00
650 6 0.00
651 3 0.00
652 2 0.00
654 3 0.00
655 4 0.00
658 3 0.00
659 5 0.00
660 1 0.00
661 1 0.00
664 1 0.00
665 2 0.00
666 2 0.00
667 2 0.00
669 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (609 bp):
TTACGTGAGAATAGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAAAAATTTTCTAAC
ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGGTCCATT
CCTTCAAGCAATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATTGGT
TCTTGGACGAACTTCTAAACTTGTAAAACTTTTACGAGTTCTTTATAACTTTGGTTCCTTAAAGT
ATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTTAATGCTCGGGAATATCTAAACAG
TTTTTCATTTTGTAAACAACTTTT
Found at i:8983 original size:192 final size:191
Alignment explanation
Indices: 8616--9010 Score: 553
Period size: 192 Copynumber: 2.1 Consensus size: 191
8606 GTCTTTGAAT
* * * * ** * *
8616 TAAAAAACTTATTTATGTGAGAATTGTTTCATTGGTTCTTGGACGAACTTTTAAACTTGTCAAAG
1 TAAACAACTTTTTTACGTGAGAATTGTTTCATTGGTTCTTGGACAAACTTCCAAACTTGTAAAAC
* *
8681 TTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAATGTTCAAGACGATCCTTTCCTTCGAGCAA
66 TTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAATATTCAAGACGATCCATTCCTTCGAGCAA
*
8746 TTTTCTAAACATTTAATGCTCGGGAAATTGCATCATTTCGTCTAAAAAGTTTTTCATTTTG
131 TTTTCTAAACATTTAATGCTCGGGAAATCGCATCATTTCGTCTAAAAAGTTTTTCATTTTG
*
8807 TAAACAACTTTTTTACGTGAGAATTGTATAT-ATTGGTTCTTGGACAAACTTCCAAACTTTTAAA
1 TAAACAACTTTTTTACGTGAGAATTGT-T-TCATTGGTTCTTGGACAAACTTCCAAACTTGTAAA
** *
8871 ACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTA-AATTATTCAAGATGATCCATTCCTTCGAG
64 ACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAA-TATTCAAGACGATCCATTCCTTCGAG
* * * * *
8935 CAATTTTCTGAATATTTCAA-GCTCGGGAAATCGCGTCATTTGGTCTAAATAGTTTTTCATTTTG
128 CAATTTTCTAAACATTT-AATGCTCGGGAAATCGCATCATTTCGTCTAAAAAGTTTTTCATTTTG
8999 TAAACAACTTTT
1 TAAACAACTTTT
9011 GGTCTTTGAA
Statistics
Matches: 180, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
191 26 0.14
192 151 0.84
193 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.42
Consensus pattern (191 bp):
TAAACAACTTTTTTACGTGAGAATTGTTTCATTGGTTCTTGGACAAACTTCCAAACTTGTAAAAC
TTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAATATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCTAAACATTTAATGCTCGGGAAATCGCATCATTTCGTCTAAAAAGTTTTTCATTTTG
Found at i:9213 original size:216 final size:216
Alignment explanation
Indices: 8807--10897 Score: 1747
Period size: 216 Copynumber: 9.9 Consensus size: 216
8797 TTTCATTTTG
* * * * *
8807 TAAACAACTTTTTTACGTGAGAAT--TGTATATATTGGTTCTTGGACAAACTTCCAAACTTTTAA
1 TAAA-AACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAA
* * * *
8870 AACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAATTATTCAA-GATGATCCATTCCTTCGA
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCT-ATCCATTCCTTCGA
* * *
8934 GCAA-TTTTCTGAATATTTCA-AGCTCGGGAAATCGCGTCATTTGGTCTAAATAGTTTTTCATTT
129 GCAATTTTTC-GAACATTTCATA-CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTT
8997 TGTAAACAACTTTTGGTCTTTGAAT
192 TGTAAACAACTTTTGGTCTTTGAAT
* * ** *
9022 TAAAAAATTATTTACGTGAGAATAGTGTCTCTCTTGGTTCTTGGACGAACTTCCAAACAAGTCAA
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
* * * *
9087 ACTTTTATGAGTTCTTTTATTACTTCAGTTCCTTAAAGTATTCAAGGCTATACATTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTATCCATTCCTTCGAGC
* *
9152 AATTTTTCGAACATTTCATACTCGAGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
131 AATTTTTCGAACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA
* *
9217 AACAAGTTCTGGTCTTTGAAT
196 AACAACTTTTGGTCTTTGAAT
* * * * * * *
9238 TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCAAAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
* * * * * * *
9303 ACTTTTACAAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAC-AGTCGATTCCTTCAAT
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTA-TCCATTCCTTCGAG
* * ** * *
9367 CAATTTTTCGAACATTCCAT-GTTTAGGAAATCGCATCATTTGATCTAAATAGTTTTCCATTTTG
130 CAATTTTTCGAACATTTCATACTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
* *
9431 TAAACAAGTTTTGGTCTTTAAAT
194 TAAACAACTTTTGGTCTTTGAAT
* * * * *
9454 TTAAAACTTATTTACGCGAGAATA--GTATATATTGGTTCTTGGACGAACTTCCAAAATTGTAAA
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
* * * *
9517 ACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCAAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTATCCATTCCTTCGAGC
*
9582 AATTTTTTGAACA-TTCA-ACGCTC-AGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
131 AATTTTTCGAACATTTCATA--CTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* *
9644 GTAAAAAAATTTTGGTCTTTGAAT
193 GTAAACAACTTTTGGTCTTTGAAT
* * ** *
9668 TACAAAACTTATTTACGTGAGAATCGT-T-TCTATTGGTTCTTGGATGAACTTCTGAACTTGTCA
1 TA-AAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAA
* * ** * * *
9731 TAGTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT-CATTTCCTTTGA
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTATCCA-TTCCTTCGA
* * * * *
9795 GCAATTTTTCGAACATTTAATGCTCAAGAGAAATTGCATCGTTTGGTCTAAAAAGTTTTTCATTT
129 GCAATTTTTCGAACATTTCATACTC--GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTT
**
9860 TGTAAACAACTTTT--T-TACGTAA-
192 TGTAAACAACTTTTGGTCTTTG-AAT
* * * * * * ** * **
9882 -GAAAAGTT-TCT-C-T----CTTG-GTC-CT-TGGGCGAACTT--CCGAACTTTTGAAAC-T-T
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTAT-TG-GTTCTTGGACGAAC-TTCCAAACTTGT
* * * * * * *
9932 -----T--TATGAATTCTTTTGTAACTACAGTTCCTTAAAGTATTCAA-GATGATACATTCCTTC
63 AAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCT-ATCCATTCCTTC
* * * *
9989 GAGCAATTTTTTGAACATTTCATGCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTT
127 GAGCAATTTTTCGAACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTT
10054 TGTAAACAACTTTTGGTCTTTGAAT
192 TGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
10079 TAAAAACTTATTTAAGTGAGAATACTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTCGTAAA
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
*
10144 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GATGATCCATTCCTTCGAG
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCT-ATCCATTCCTTCGAG
* * ** ** * ** * * * *
10208 -AA---ATCGCATCATTTGGT-CTAAATAGTTTG--TCATTT--TGTAAACA-------AGTTT-
130 CAATTTTTCG-AACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
*
10256 T-----------GGTCTTTCAAT
194 TAAACAACTTTTGGTCTTTGAAT
* * * * * * *
10268 TTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTGTCAA
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
* * * * * * * *
10333 ACTTTTACAAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCGATTCCTTCAATC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTATCCATTCCTTCGAGC
* * * * * * * *
10398 ATTTTTTCTAACATTCCATGCTCGAGAAATCGCATTATTTGGTCGAAATAGTTTTCCATATTGTA
131 AATTTTTCGAACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA
*
10463 AACAAGTTTTGGTCTTTGAATT
196 AACAACTTTTGGTCTTTGAA-T
* * * *
10485 TAAAAACTTATTTACGTGAGAAT--TGTATATATTGGTTCTTGGACAAACTTCCGAACTTGTAAA
1 TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
* * * * *
10548 ACTTTTATGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTAAAGAC-AGTCCATTCCTTCAAG
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTA-TCCATTCCTTCGAG
* * * * *
10612 CAATTTTTTGAACATTCCACACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTT-ATTTTC
130 CAATTTTTCGAACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTTTG
* *
10676 TAAAAAAGTTTTGGTCTTTGAAT
194 TAAACAACTTTTGGTCTTTGAAT
* * ** *
10699 TACAAAACTTATTTACGTGAGAATCGT-T-TCTATTGGTTCTTGGACGTACTTTTAAACTTGTCA
1 TA-AAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAA
* * * * *
10762 AAGTTTTACGAGTTCTTTTAT-A----GGTTTCTTAAAGTATTCAAGACGAT-CATTTCCTTTGA
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTATCCA-TTCCTTCGA
* * * * * * * *
10821 TCAATTTTCCAAACATTTAATGCTCGAGAAATTGCATCGTTTGGTCTAAAAAGTTTTTCATTTTG
129 GCAATTTTTCGAACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
10886 TAAACAACTTTT
194 TAAACAACTTTT
10898 TTACATGAGA
Statistics
Matches: 1508, Mismatches: 275, Indels: 191
0.76 0.14 0.10
Matches are distributed among these distances:
189 118 0.08
190 1 0.00
192 6 0.00
193 8 0.01
194 47 0.03
195 5 0.00
196 70 0.05
197 9 0.01
198 7 0.00
199 2 0.00
200 1 0.00
201 5 0.00
203 1 0.00
204 9 0.01
205 13 0.01
206 10 0.01
207 9 0.01
208 11 0.01
209 6 0.00
210 94 0.06
211 3 0.00
212 13 0.01
213 10 0.01
214 186 0.12
215 358 0.24
216 429 0.28
217 76 0.05
218 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (216 bp):
TAAAAACTTATTTACGTGAGAATAGTGTCTCTATTGGTTCTTGGACGAACTTCCAAACTTGTAAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCTATCCATTCCTTCGAGC
AATTTTTCGAACATTTCATACTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA
AACAACTTTTGGTCTTTGAAT
Found at i:10234 original size:189 final size:189
Alignment explanation
Indices: 10018--10393 Score: 576
Period size: 189 Copynumber: 2.0 Consensus size: 189
10008 TCATGCTCGG
* *
10018 GAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
1 GAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAA
* *
10083 AACTTATTTA-AGTGAGAATACTTTCTCTCTTGGTTCTTGGATGAACTTTC-GAACTCGTAAAAC
66 AACTTATTTACA-TGAGAATACTTTCTCTCTTGGTTCTTGGACGAAC-TTCAAAACTCGTAAAAC
* * *
10146 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
129 TTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
10207 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTCAATTTAA
1 GAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAA
** * *
10272 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTGTCAAACTT
66 AACTTATTTACATGAGAATACTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTCGTAAAACTT
* *
10337 TTACAAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCGATTCCTTC
131 TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
10394 AATCATTTTT
Statistics
Matches: 169, Mismatches: 16, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
188 3 0.02
189 165 0.98
190 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (189 bp):
GAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAA
AACTTATTTACATGAGAATACTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTCGTAAAACTT
TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
Found at i:10644 original size:215 final size:215
Alignment explanation
Indices: 10203--10897 Score: 755
Period size: 215 Copynumber: 3.3 Consensus size: 215
10193 ATCCATTCCT
*
10203 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTCAAT
1 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* * * * *
10268 TT-AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTG--TATCTATTGGTTCTTGGACAAACTTCAAAACTTGTAA
* * * * *
10332 AACTTTTACAAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCGATTCCTTCAAT
129 AACTTTTACAAGTTCCTTTATAACTTCGATTCCTTAAAGTATTAAAGACGATCCATTCCTTCAAG
* **
10397 CATTTTTTCTAACATTCCATGC
194 CATTTTTTCGAACATTCCACAC
* * *
10419 TCGAGAAATCGCATTATTTGGTCGAAATAGTTT-TCCATATTGTAAACAAGTTTTGGTCTTTGAA
1 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTCTTTGAA
* **
10483 TTTAAAAACTTATTTACGTGAGAATTGTATATATTGGTTCTTGGACAAACTTCCGAACTTGTAAA
65 TTTAAAAACTTATTTACGTGAGAATTGTATCTATTGGTTCTTGGACAAACTTCAAAACTTGTAAA
** *
10548 ACTTTTATGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTAAAGAC-AGTCCATTCCTTCAAG
130 ACTTTTACAAGTTCCTTTATAACTTCGATTCCTTAAAGTATTAAAGACGA-TCCATTCCTTCAAG
10612 CAATTTTTT-GAACATTCCACAC
194 C-ATTTTTTCGAACATTCCACAC
* * * *
10634 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTCTAAAAAAGTTTTGGTCTTTGAA-
1 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* * ** ** *
10698 TTACAAAACTTATTTACGTGAGAATCGTTTCTATTGGTTCTTGGACGTACTTTTAAACTTGTCAA
66 TTA-AAAACTTATTTACGTGAGAATTGTATCTATTGGTTCTTGGACAAACTTCAAAACTTGTAAA
* * * * * * ** *
10763 AGTTTTACGAGTT-CTTT-T-A--TAGGTTTCTTAAAGTATTCAAGACGAT-CATTTCCTTTGAT
130 ACTTTTACAAGTTCCTTTATAACTTCGATTCCTTAAAGTATTAAAGACGATCCA-TTCCTTCAAG
* * * ** **
10822 CAATTTTCCAAACATTTAATGC
194 CATTTTTTCGAACATTCCACAC
* * * * *
10844 TCGAGAAATTGCATCGTTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT
1 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
10898 TTACATGAGA
Statistics
Matches: 407, Mismatches: 63, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
209 7 0.02
210 83 0.20
211 1 0.00
212 1 0.00
213 1 0.00
214 8 0.02
215 215 0.53
216 69 0.17
217 22 0.05
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
TTAAAAACTTATTTACGTGAGAATTGTATCTATTGGTTCTTGGACAAACTTCAAAACTTGTAAAA
CTTTTACAAGTTCCTTTATAACTTCGATTCCTTAAAGTATTAAAGACGATCCATTCCTTCAAGCA
TTTTTTCGAACATTCCACAC
Found at i:11064 original size:194 final size:191
Alignment explanation
Indices: 10704--11303 Score: 570
Period size: 212 Copynumber: 3.0 Consensus size: 191
10694 TGAATTACAA
* * * * * * *
10704 AACTTATTTACGTGAGAATCG-TT-TCTATTGGTTCTTGGACGTACTTTTAAACTTGTCAAAGTT
1 AACTTTTTTACATGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTT
10767 TTACGAGTTC-TTT-T-A-TAGGTTTCTTAAAGTATTCAAGACGATCATTTCCTTTGA-TCAATT
66 TTACGAGTTCTTTTATAACTAGG-TTCTTAAAGTATTCAAGACGATCA-TTCCTTTGAGT-AATT
* * * *
10827 TTCCA-AACATTTAATGCTCGAGAAATTGCATCGTTTGGTCTAAAAAGTTTTTCATTTTGTAAAC
128 TT-CAGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAC
* ** * *
10891 AACTTTTTTACATGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTTTAAAACTT
1 AACTTTTTTACATGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTT
*
10956 TTACGAGTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAGTAATT
66 TTACGAGTTCTTTTATAACTA-GGTT-CTTAAAGTATTCAAGACGAT-CATTCCTTTGAGTAATT
** * *
11021 TTTTGAACATTTCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTTTTTCACCTTT-TAAAC
128 TTCAGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCA-TTTTGTAAAC
* *
11085 AACATTTGGTTAATTAAAAACTTATTTACGTGAGAATACTTTCACTCTTGGTTCTTGGACGAACT
1 AAC--TT--TT--TT----AC------A--TGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
11150 TTTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCTCGAAAGTATTCAAGATGAT
48 TTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TAGGTTCT-TAAAGTATTCAAGACGAT
* * * * *
11215 CCATTCTTTTAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATTTGGTCTAAATAG
111 -CATTCCTTTGAGTAATTTTCAGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
11280 TTTGTCATTTTGTAAAC
175 TTTTTCATTTTGTAAAC
*
11297 AAGTTTT
1 AACTTTT
11304 GGTCTTTGAA
Statistics
Matches: 335, Mismatches: 45, Indels: 45
0.79 0.11 0.11
Matches are distributed among these distances:
187 18 0.05
188 2 0.01
189 41 0.12
190 3 0.01
191 1 0.00
192 1 0.00
193 4 0.01
194 88 0.26
195 6 0.02
196 2 0.01
198 2 0.01
200 2 0.01
204 2 0.01
208 2 0.01
210 3 0.01
211 5 0.01
212 152 0.45
213 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (191 bp):
AACTTTTTTACATGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTT
TTACGAGTTCTTTTATAACTAGGTTCTTAAAGTATTCAAGACGATCATTCCTTTGAGTAATTTTC
AGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAC
Found at i:11401 original size:216 final size:216
Alignment explanation
Indices: 10886--12627 Score: 1919
Period size: 216 Copynumber: 8.1 Consensus size: 216
10876 TTTCATTTTG
* * * * * * * *
10886 TAAACAACTTTTTTACATGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTTTAA
1 TAAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCA
* *
10951 AACTTTTACGAGTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** * * * * *
11016 TAATTTTTTGAACATTTCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTTTTTCACCTTT-
130 CAATTTTCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTG
**
11080 TAAACAACATTTGG---TT-AAT
194 TAAACAAGTTTTGGTCTTTGAAT
** * ***
11099 TAAAAACTTATTTACGTGAGAATACTTTCACTCTTGGTTCTTGGACGAACTTTTGAAC-TAGTCA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACAT-GTCA
* * * * **
11163 AACTTTTACGAGTTCTTTTATAACTTTGGTT-CTCGAAAGTATTCAAGATGATCCATTCTTTTAA
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGA
* *
11227 GCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
129 GCAATTTTCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
11292 TAAACAAGTTTTGGTCTTTGAAT
194 TAAACAAGTTTTGGTCTTTGAAT
* * *
11315 TTAAAATTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * * * * **
11380 ACTTTTACGAGTTCATTTATAACTTTGATTCCTTAAAGTATTCAAGACGGTTCATTCCTTCGAAT
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
11445 AATTTTCCA-AACATTCTATGCTGGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCAATTTGT
131 AATTTT-CAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
11509 AAACAAGTTTTGGTCTTTGAAT
195 AAACAAGTTTTGGTCTTTGAAT
*** * * * * *
11531 TAAAATA-TT-TTTATAAGAGAATTG-TT-TCTATTGGTTCTTGGACAAAGTTTCAAACTTGTCA
1 TAAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCA
* * * * * * *
11592 AAATTTTTCGAGTTCTATTATAACTTCGATTCCTTAAAGCATTCAAGACGATCCTTTCCTCCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
** * * ** *
11657 CAATTTTTTGAAAATTCCATGCTCGAGAAATCATATCATTT-TTCTAAA-ACGTTTGTCATTTTG
130 CAATTTTCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTG
***** *
11720 TAAACAAGTCAAACTCTTTCAAT
194 TAAACAAGTTTTGGTCTTTGAAT
* *
11743 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCTAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * * *
11808 ACTTTTACGAGGTT-TTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGGTCCATTCCTTAGAG
66 ACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
11872 CAATTTTCGGAACATTCCAAGCTCAGGAAATCGCATCAAATT-GTCTAAATAGTTTTTCATTTTG
130 CAATTTTCAGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTG
11936 TAAACAAGTTTTGGTCTTTGAAT
194 TAAACAAGTTTTGGTCTTTGAAT
* * * * * * *
11959 TATAAACTTATTTAAGTGAGAATTATTTCTTTCTTGGTTCTTGGAAGAACTTTCAAACTAT-TAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC-ATGTCA
* * * *
12023 AACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGAATTTAAAACGATCCATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
12088 CAATTTTCCGAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 CAATTTTCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
12153 AAAAAAGTTTTAGACTTTGAAT
195 AAACAAGTTTTGGTCTTTGAAT
* *
12175 TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * * * * *
12240 ACATTTACGAGTTCTTTTATAATTTAGGTTCCTTAAAGTATTCAAGACGGTCCTTTCCTTCGAGA
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *
12305 AATTTTCCA-AACATTCCATGC-CTAGGAAATCGCATCATTTTGTCTAAATAGTTTTTCATTTTG
131 AATTTT-CAGAACATTCCATGCTC-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
12368 TAAACAAGTTTTGGTCTTT-AAGT
194 TAAACAAGTTTTGGTCTTTGAA-T
* * * * * ** * * *
12391 TAAAAACTTTTTTA-GTGAG-A-GGTATATCTATTGGTTCTTAAACGAACTTCTAAACTTTTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * * * * *
12453 ACTTTTACAAGTTCTTTCATAACTTCGGTTGCTTAAAGCATTTAAGACGATCCTTTCCTTCGAGC
66 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * ** * * *
12518 AATTTTCCGAACATTCCATGCTCAGGAAATTGCATCATTTTTTTCTAAAAATTTTGTCAATTTGT
131 AATTTTCAGAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGT
* *
12583 AAACAAGTTTTGCTCTTTCAAT
195 AAACAAGTTTTGGTCTTTGAAT
*
12605 TAAAAGCTTATTTACGTGAGAAT
1 TAAAAACTTATTTACGTGAGAAT
12628 CGTGATGCAA
Statistics
Matches: 1286, Mismatches: 209, Indels: 64
0.82 0.13 0.04
Matches are distributed among these distances:
211 8 0.01
212 209 0.16
213 251 0.20
214 58 0.05
215 144 0.11
216 606 0.47
217 10 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
AATTTTCAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTTGGTCTTTGAAT
Found at i:11713 original size:428 final size:427
Alignment explanation
Indices: 10886--12627 Score: 2009
Period size: 428 Copynumber: 4.1 Consensus size: 427
10876 TTTCATTTTG
* * * * * * * *
10886 TAAACAACTTTTTTACATGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTTTAA
1 TAAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCA
** * * *
10951 AACTTTTACGAGTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAA
*** * *
11016 TAATTTTTTGAACATTTCATGCTC-GAGAAATCGCATCATTTAGTCTAAATAGTTTTTCACCTTT
130 TAATTTTCCAAACATTCCATGCTCAG-GAAATCGCATCATTT-GTCTAAATAGTTTTTCA-TTTT
** * *
11080 -TAAACAACATTTGG---TTAATTAAAAACTTATTTA-CGTGAGAA-TACTTTCACTCTTGGTTC
192 GTAAACAAGTTTTGGTCTTTAATTAAAAACTT-TTTATAGTGAGAATTA-TTT--CTATTGGTTC
* ** * * * * *
11139 TTGGACGAACTTTTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT-CTCGAAAGT
253 TTGGACAAACTTTCAAACTTGTCAAAATTTTACGAGTTC-TTTATAACTTCGGTTCCT-TAAAGC
* * ** * * *
11203 ATTCAAGATGATCCATTCTTTTAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATT
316 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATT
** *
11268 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
381 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTACTCTTTCAAT
* * *
11315 TTAAAATTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * *
11380 ACTTTTACGAGTTCATTTATAACTTTGATTCCTTAAAGTATTCAAGACGGTTCATTCCTTCGAAT
66 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAAT
* ** *
11445 AATTTTCCAAACATTCTATGCTGGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCAATTTGTA
131 AATTTTCCAAACATTCCATGCTCAGGAAATCGCATCATTTG-TCTAAATAGTTTTTCATTTTGTA
* *
11510 AACAAGTTTTGGTCTTTGAATTAAAATA-TTTTTATA-AGAGAATTGTTTCTATTGGTTCTTGGA
195 AACAAGTTTTGGTCTTT-AATTAAAA-ACTTTTTATAGTGAGAATTATTTCTATTGGTTCTTGGA
* * *
11573 CAAAGTTTCAAACTTGTCAAAATTTTTCGAGTTCTATTATAACTTCGATTCCTTAAAGCATTCAA
258 CAAACTTTCAAACTTGTCAAAATTTTACGAGTTCT-TTATAACTTCGGTTCCTTAAAGCATTCAA
* * ** * * *
11638 GACGATCCTTTCCTCCGAGCAATTTTTTGAAAATTCCATGCTCGAGAAATCATATCATTT-TTCT
322 GACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCT
***
11702 AAA-ACGTTTGTCATTTTGTAAACAAGTCAAACTCTTTCAAT
387 AAATA-GTTTGTCATTTTGTAAACAAGTTTTACTCTTTCAAT
* *
11743 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCTAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* * *
11808 ACTTTTACGAGGTT-TTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGGTCCATTCCTTAGAG
66 ACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAA
* ** * *
11872 CAATTTTCGGAACATTCCAAGCTCAGGAAATCGCATCAAATTGTCTAAATAGTTTTTCATTTTGT
130 TAATTTTCCAAACATTCCATGCTCAGGAAATCGCATC-ATTTGTCTAAATAGTTTTTCATTTTGT
* *
11937 AAACAAGTTTTGGTCTTTGAATTATAAACTTATTTA-AGTGAGAATTATTTCTTTCTTGGTTCTT
194 AAACAAGTTTTGGTCTTT-AATTAAAAACTT-TTTATAGTGAGAATTATTTC--TATTGGTTCTT
*
12001 GGA-AGAACTTTCAAACTAT-T-AAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGA
255 GGACA-AACTTTCAAACT-TGTCAAAA-TTTTACGAGTT-CTTTATAACTTCGGTTCCTTAAAGC
* * * * *
12063 ATTTAAAACGATCCATTCCTTCGAGCAATTTTCCGAACATTTCATGCTCGGGAAATCGCATCATT
316 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATT
* ** *
12128 TGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGACTTTGAAT
381 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTACTCTTTCAAT
* *
12175 TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
* *
12240 ACATTTACGAGTTCTTTTATAA-TTTAGGTTCCTTAAAGTATTCAAGACGGTCCTTTCCTTCGAG
66 ACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGA-
12304 A-AATTTTCCAAACATTCCATGC-CTAGGAAATCGCATCATTTTGTCTAAATAGTTTTTCATTTT
129 ATAATTTTCCAAACATTCCATGCTC-AGGAAATCGCATCA-TTTGTCTAAATAGTTTTTCATTTT
** * *
12367 GTAAACAAGTTTTGGTCTTTAAGTTAAAAACTTTTT-TAGTGAGAGGTATATCTATTGGTTCTTA
192 GTAAACAAGTTTTGGTCTTTAA-TTAAAAACTTTTTATAGTGAGAATTATTTCTATTGGTTCTTG
* * * * * *
12431 AACGAAC-TTCTAAACTTTTCAAACTTTTACAAGTTCTTTCATAACTTCGGTTGCTTAAAGCATT
256 GACAAACTTTC-AAACTTGTCAAAATTTTACGAGTTCTTT-ATAACTTCGGTTCCTTAAAGCATT
* * **
12495 TAAGACGATCCTTTCCTTCGAGCAATTTTCCGAACATTCCATGCTC-AGGAAATTGCATCATTTT
319 CAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGA-GAAATCACATCA-TTT
** * * * *
12559 TTTCTAAAAATTTTGTCAATTTGTAAACAAGTTTTGCTCTTTCAAT
382 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTACTCTTTCAAT
*
12605 TAAAAGCTTATTTACGTGAGAAT
1 TAAAAACTTATTTACGTGAGAAT
12628 CGTGATGCAA
Statistics
Matches: 1125, Mismatches: 148, Indels: 79
0.83 0.11 0.06
Matches are distributed among these distances:
427 6 0.01
428 408 0.36
429 243 0.22
430 70 0.06
431 150 0.13
432 246 0.22
433 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (427 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAA
ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAAT
AATTTTCCAAACATTCCATGCTCAGGAAATCGCATCATTTGTCTAAATAGTTTTTCATTTTGTAA
ACAAGTTTTGGTCTTTAATTAAAAACTTTTTATAGTGAGAATTATTTCTATTGGTTCTTGGACAA
ACTTTCAAACTTGTCAAAATTTTACGAGTTCTTTATAACTTCGGTTCCTTAAAGCATTCAAGACG
ATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
AGTTTGTCATTTTGTAAACAAGTTTTACTCTTTCAAT
Found at i:12557 original size:860 final size:857
Alignment explanation
Indices: 10886--12627 Score: 2330
Period size: 860 Copynumber: 2.0 Consensus size: 857
10876 TTTCATTTTG
* * * * * *
10886 TAAACAACTTTTTTACATGAGAATAGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTTTAA
1 TAAA-AACTTATTTACGTGAGAATAGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTAA
*
10951 AACTTTTACGAGTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGAG
65 AACTTTTACGAGTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTAGAG
* ** * * *
11016 TAATTTTTTGAACATTTCATGCTCGAGAAATCGCATCATTTAGTCTAAATAGTTTTTCACCTTTT
130 CAATTTTCGGAACATTCCAAGCTCGAGAAATCGCATCAATTAGTCTAAATAGTTTTTCACCTTTT
* *
11081 AAACAACATTTGGTTAATTAAAAACTTATTTACGTGAGAATACTTTCACTCTTGGTTCTTGGACG
195 AAACAACATTTGGTTAATTAAAAACTTATTTAAGTGAGAATACTTTCACTCTTGGTTCTTGGAAG
** * * * * *
11146 AACTTTTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCTCGAAAGTATTCAAGA
260 AACTTTCAAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCGGTTCTCGAAAGAATTCAAAA
* * *
11211 TGATCCATTCTTTTAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATTTGGTCTAA
325 CGATCCATTCCTTCAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATTTGGTCTAA
* * * * *
11276 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTTAAAATTTATTTACGCGAGAATTGT
390 ATAGTTTGTCATTTTGTAAAAAAGTTTTAGACTTTGAATTAAAAACTTATTTACGCGAGAATTGT
*
11341 TTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTACGAGTTCATTTATAACTTT
455 TTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACATTTACGAGTTCATTTATAACTTT
* * *
11406 GATTCCTTAAAGTATTCAAGACGGTTCATTCCTTCGAATAATTTTCCAAACATTCTATGCTGGGG
520 GATTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAATAATTTTCCAAACATTCCATGCTGAGG
11471 AAATCGCATCATTTGCTCTAAATAGTTTTTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
585 AAATCGCATCATTTGCTCTAAATAGTTTTTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
* * * ** * *
11536 TATTTTTATAAGAGAATTGTTTCTATTGGTTCTTGGACAAAGTTTCAAACTTGTCAAAATTTTTC
650 TATTTTTATAAGAGAAGTATATCTATTGGTTCTTAAACAAACTTTCAAACTTGTCAAAATTTTAC
* **
11601 GAGTTCTATTATAACTTCGATTCCTTAAAGCATTCAAGACGATCCTTTCCTCCGAGCAATTTTTT
715 AAGTTCTATTATAACTTCGATTCCTTAAAGCATTCAAGACGATCCTTTCCTCCGAGCAATTTTCC
* * *
11666 GAAAATTCCATGCTCGAGAAATCATATCA-TTTTTCTAAAACGTTTGTCATTTTGTAAACAAGTC
780 GAAAATTCCATGCTCGAGAAATCACATCATTTTTTCTAAAAAGTTTGTCAATTTGTAAACAAGTC
11730 AAACTCTTTCAAT
845 AAACTCTTTCAAT
* * * *
11743 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCTAAACATGTCAA
1 TAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTAAA
** * * *
11808 ACTTTTACGAGGTT-TTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGGTCCATTCCTTAGAG
66 ACTTTTACGA-GTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTAGAG
*
11872 CAATTTTCGGAACATTCCAAGCTC-AGGAAATCGCATCAAATT-GTCTAAATAGTTTTTCA-TTT
130 CAATTTTCGGAACATTCCAAGCTCGA-GAAATCGCATC-AATTAGTCTAAATAGTTTTTCACCTT
** * **
11934 TGTAAACAAGTTTTGGTCTTTGAATTATAAACTTATTTAAGTGAGAATTA-TTTCTTTCTTGGTT
193 T-TAAACAACATTTGG---TT-AATTAAAAACTTATTTAAGTGAGAA-TACTTTCACTCTTGGTT
* *
11998 CTTGGAAGAACTTTCAAACTATTAAAACTTTTACGAGTTCCTTTATAACTTCGGTTC-CTTAAAG
252 CTTGGAAGAACTTTCAAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCGGTTCTC-GAAAG
* * * *
12062 AATTTAAAACGATCCATTCCTTCGAGCAATTTTCCGAACATTTCATGCTCGGGAAATCGCATCAT
316 AATTCAAAACGATCCATTCCTTCAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCAT
* *
12127 TTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGACTTTGAATTAAAAACTTATTTATGT
381 TTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTAGACTTTGAATTAAAAACTTATTTACGC
* *
12192 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACATGTCAAACATTTACGAGTTCTTT
446 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACATTTACGAGTTCATT
* *
12257 TATAA-TTTAGGTTCCTTAAAGTATTCAAGACGGTCCTTTCCTTCGAGA-AATTTTCCAAACATT
511 TATAACTTT-GATTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGA-ATAATTTTCCAAACATT
*
12320 CCATGCCT-AGGAAATCGCATCATTTTG-TCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
574 CCATG-CTGAGGAAATCGCATCA-TTTGCTCTAAATAGTTTTTCAATTTGTAAACAAGTTTTGGT
* * *
12383 CTTT-AAGTTAAAA-ACTTTTT-TAGTGAGAGGTATATCTATTGGTTCTTAAACGAAC-TTCTAA
637 CTTTGAA-TTAAAATA-TTTTTATA-AGAGAAGTATATCTATTGGTTCTTAAACAAACTTTC-AA
* * * * *
12444 ACTTTTCAAACTTTTACAAGTTCT-TTCATAACTTCGGTTGCTTAAAGCATTTAAGACGATCCTT
698 ACTTGTCAAAATTTTACAAGTTCTATT-ATAACTTCGATTCCTTAAAGCATTCAAGACGATCCTT
* * ** *
12508 TCCTTCGAGCAATTTTCCGAACATTCCATGCTC-AGGAAATTGCATCATTTTTTTCTAAAAATTT
762 TCCTCCGAGCAATTTTCCGAAAATTCCATGCTCGA-GAAATCACATCA-TTTTTTCTAAAAAGTT
****
12572 TGTCAATTTGTAAACAAGTTTTGCTCTTTCAAT
825 TGTCAATTTGTAAACAAGTCAAACTCTTTCAAT
*
12605 TAAAAGCTTATTTACGTGAGAAT
1 TAAAAACTTATTTACGTGAGAAT
12628 CGTGATGCAA
Statistics
Matches: 770, Mismatches: 93, Indels: 39
0.85 0.10 0.04
Matches are distributed among these distances:
855 4 0.01
856 164 0.21
857 10 0.01
859 17 0.02
860 503 0.65
861 9 0.01
862 63 0.08
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (857 bp):
TAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACATGTAAA
ACTTTTACGAGTTCTTTTATAACTACGGTTCCTTAAAGTATTCAAGACGATACATTCCTTAGAGC
AATTTTCGGAACATTCCAAGCTCGAGAAATCGCATCAATTAGTCTAAATAGTTTTTCACCTTTTA
AACAACATTTGGTTAATTAAAAACTTATTTAAGTGAGAATACTTTCACTCTTGGTTCTTGGAAGA
ACTTTCAAACTAGTAAAACTTTTACGAGTTCCTTTATAACTTCGGTTCTCGAAAGAATTCAAAAC
GATCCATTCCTTCAAGCAATTTTCAGAACATTTCATGCTCGGGAAATCACATCATTTGGTCTAAA
TAGTTTGTCATTTTGTAAAAAAGTTTTAGACTTTGAATTAAAAACTTATTTACGCGAGAATTGTT
TCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACATTTACGAGTTCATTTATAACTTTG
ATTCCTTAAAGTATTCAAGACGGTCCATTCCTTCGAATAATTTTCCAAACATTCCATGCTGAGGA
AATCGCATCATTTGCTCTAAATAGTTTTTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAT
ATTTTTATAAGAGAAGTATATCTATTGGTTCTTAAACAAACTTTCAAACTTGTCAAAATTTTACA
AGTTCTATTATAACTTCGATTCCTTAAAGCATTCAAGACGATCCTTTCCTCCGAGCAATTTTCCG
AAAATTCCATGCTCGAGAAATCACATCATTTTTTCTAAAAAGTTTGTCAATTTGTAAACAAGTCA
AACTCTTTCAAT
Found at i:12717 original size:15 final size:15
Alignment explanation
Indices: 12693--12757 Score: 60
Period size: 15 Copynumber: 4.3 Consensus size: 15
12683 GCTTGAAAGA
*
12693 TGCGAGCACTCATGT
1 TGCGAACACTCATGT
* *
12708 TGCGAACACTGGA-GC
1 TGCGAACACT-CATGT
*
12723 TGCGAACACTGATGT
1 TGCGAACACTCATGT
* *
12738 TGCAAACACTCGTGT
1 TGCGAACACTCATGT
12753 TGCGA
1 TGCGA
12758 GCATGAATGA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 2 0.05
15 37 0.93
16 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (15 bp):
TGCGAACACTCATGT
Found at i:12757 original size:30 final size:30
Alignment explanation
Indices: 12693--12749 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
12683 GCTTGAAAGA
* * *
12693 TGCGAGCACTCATGTTGCGAACACTGGAGC
1 TGCGAACACTCATGTTGCAAACACTCGAGC
*
12723 TGCGAACACTGATGTTGCAAACACTCG
1 TGCGAACACTCATGTTGCAAACACTCG
12750 TGTTGCGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (30 bp):
TGCGAACACTCATGTTGCAAACACTCGAGC
Found at i:14832 original size:48 final size:48
Alignment explanation
Indices: 14724--14894 Score: 236
Period size: 48 Copynumber: 3.5 Consensus size: 48
14714 TATTAAGAGT
* * * *
14724 TTTTTTTTGTTAAATGCAGT-TTTGTTTAAATAATCTGCATCATTAAGTG
1 TTTTGTTTGTTAAATGCA-TCTTTGTTT-AGTAATCTGCATTATTAACTG
* *
14773 TTTTGTCTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTA
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
* * *
14821 TTTTATTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAATTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
14869 TTTTGTTTGTTAAATGCATCTTTGTT
1 TTTTGTTTGTTAAATGCATCTTTGTT
14895 CAATGCCTTG
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
48 86 0.79
49 23 0.21
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.53
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
Found at i:22864 original size:48 final size:48
Alignment explanation
Indices: 22763--22924 Score: 243
Period size: 48 Copynumber: 3.4 Consensus size: 48
22753 TAATAAGTGT
* * * * *
22763 TTTTTTTTGTTAAATGCAGCTTTGTTTAAATAATCTGCATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTT-AGTAATCTGCATTATTAACTG
22812 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
* *
22860 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTA
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
*
22908 TTTTATTTGTTAAATGC
1 TTTTGTTTGTTAAATGC
22925 CTTGCATTAA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 80 0.76
49 25 0.24
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
Found at i:23465 original size:80 final size:79
Alignment explanation
Indices: 23361--23517 Score: 262
Period size: 80 Copynumber: 2.0 Consensus size: 79
23351 TCATTAAGGA
* *
23361 GAAATGCCATGCCTTTTCAGCTACATCAGATCCTAATGAAGAGACATGACTCATTGGCTTTCC-T
1 GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGC-TTCCTT
23425 ACAAGAGTTAAAAAC
65 ACAAGAGTTAAAAAC
*
23440 GAAATTGCCATGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTT
1 GAAA-TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTT
23505 ACAAGAGTTAAAA
65 ACAAGAGTTAAAA
23518 TGAAATTAGT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
79 8 0.11
80 65 0.89
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (79 bp):
GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTTA
CAAGAGTTAAAAAC
Found at i:28470 original size:15 final size:15
Alignment explanation
Indices: 28452--28494 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
28442 CAAGCACAGG
*
28452 TGTTACGAGCACTCA
1 TGTTACGAACACTCA
* *
28467 TGTTGCGAACACTGA
1 TGTTACGAACACTCA
*
28482 TGTTGCGAACACT
1 TGTTACGAACACT
28495 TGTGTTATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (15 bp):
TGTTACGAACACTCA
Found at i:28500 original size:15 final size:15
Alignment explanation
Indices: 28461--28494 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
28451 GTGTTACGAG
*
28461 CACTCATGTTGCGAA
1 CACTGATGTTGCGAA
28476 CACTGATGTTGCGAA
1 CACTGATGTTGCGAA
28491 CACT
1 CACT
28495 TGTGTTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (15 bp):
CACTGATGTTGCGAA
Found at i:30358 original size:215 final size:215
Alignment explanation
Indices: 29724--30739 Score: 1142
Period size: 215 Copynumber: 4.7 Consensus size: 215
29714 CATCAATTCG
* * **
29724 TTTCTCTCTTTGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACGAGTTCTTTTATAACAA
1 TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
29789 CGGTTCCTTAAAGTATTCAAGATGGTCCATTCCTTCGAGCAATTTTTCGAACA-TTCAATGCTCG
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA-AAATTTTTAGAACATTTC-ATGCTCG
* *
29853 GGAAATCACAT-ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
129 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAA
* * *
29917 AAACTGAATTACGTGAGAATTG
194 AAACTTATTTACGTGAGAATTA
* * * * * *
29939 TTTCTCTCTTGGTTCTTGCACGAACTTCTAGATTTGTCAAACTTTTACGAGTTCTTTGATAACTT
1 TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * * *
30004 CGATT-C-T---GTATTCAAGACGATTCTTTCCTT-TAAGCAATTTTTGGATCATTTCATGCTCG
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAA--AATTTTTAGAACATTTCATGCTCG
* * * * * * * *
30063 GGAAATCGCATCATTTGGTTTAAATTGTTTTTGATTTTGTACACAACTTTTGTTCTTTGAATTCA
129 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAA
*
30128 AAACTTATTTACGTGAGAATAA
194 AAACTTATTTACGTGAGAATTA
* * *
30150 TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTAAAACTTTAACTAGTTCTTTTATAACTT
1 TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * *
30215 CGGTTCCATAAAGTATTCATGATGATCCATTCCTTCGAAAATTTTCT-GAACATTCCATGCTCGG
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAAAATTTT-TAGAACATTTCATGCTCGG
* * *
30279 GAAATCGCATCATTAGGTCTAAATATTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAACTAAA
130 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAA
*
30344 AACTTATTTACGTGAGAATTT
195 AACTTATTTACGTGAGAATTA
* *
30365 TTTCTCTCTTGGTTCTTGGACT-AACTTCCAAACATGTCAAACTTTTACGAGTTCTTGTATAACT
1 TTTCTCTCTTGGTTCTTGGA-TGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
30429 CCGGTTCCTTAAAGTATACAAGATGATCCGTTCCTTC-AAGCTATTTTTAAAACATTTCACGCTC
65 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAA--AATTTTTAGAACATTTCATGCTC
* * * **
30493 AGGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTGGTAAA-AAAGTTTTCATCTTTGAATT
128 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA-TTTTGGTCTTTGAATT
*
30557 AAAAAAAATTATTTACGTGAGAATTA
192 --AAAAACTTATTTACGTGAGAATTA
* * * * * * *
30583 -TT-TCTATTGGTTCTTGGATGAACTTTCGAACTTTTCAAAGTTTTACGAGTTATTTTACAACTT
1 TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * * ** * *
30646 TGGTTCCTTAAAGTATTAAAGACGATCCTTTCCTTTGAGCAATTTTTTTAACATTTAATGCTCGA
66 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA-AAATTTTTAGAACATTTCATGCTCGG
*
30711 GAAATCGCATCATTTGGTCTAAAAAGTTT
130 GAAATCGCATCATTTGGTCTAAATAGTTT
30740 TTGATTTCGT
Statistics
Matches: 668, Mismatches: 112, Indels: 41
0.81 0.14 0.05
Matches are distributed among these distances:
209 1 0.00
210 47 0.07
211 126 0.19
212 1 0.00
213 2 0.00
214 3 0.00
215 247 0.37
216 214 0.32
217 5 0.01
218 22 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAAAATTTTTAGAACATTTCATGCTCGGG
AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAA
ACTTATTTACGTGAGAATTA
Found at i:30825 original size:194 final size:195
Alignment explanation
Indices: 30525--31356 Score: 674
Period size: 194 Copynumber: 4.2 Consensus size: 195
30515 AAATAGTTTG
* ** *
30525 TCATTTGGT-AAAAAAG-TTTTCATCTTTGAATTAAAAAAAATTATTTACGTGAGAAT--TATT-
1 TCATTTGGTCTAAAAAGTTTTTCAT-TTTG---TAAAAAACTTTTTTTACGTGAGAATAGT-TTC
* * * * * *
30585 TCTATTGGTTCTTGGATGAACTTTCGAACTTTTCAAAGTTTTACGAGTTATTTTACAACTTTGGT
61 TCTATTGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
30650 TCCTTAAAGTATTAAAGACGATCCTTTCCTTTGAGCAATTTTTTTAACATTTAATGCTCGAGAAA
126 TCCTTAAAGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTCGAGAAA
30715 TCGCA
191 TCGCA
* * *
30720 TCATTTGGTCTAAAAAGTTTTTGATTTCGTAAAAAACTTTTTTTACGTGAGAATAGTTTCTCTCT
1 TCATTTGGTCTAAAAAGTTTTTCATTTTGTAAAAAACTTTTTTTACGTGAGAATAGTTTCTCTAT
* * *
30785 TGGTTC-TGGATGAACTTCCAAACATGTCAAACTTTTACGAGTTTTTTTATAACTTCGGTTCCTT
66 TGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * ** ** * *
30849 AAAGTA-TACAGGGCGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGT
131 AAAGTATTA-AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTCGAGAAATCGC
30913 A
195 A
* *** ** * * * *
30914 TCATTTGGTCTAAATA-TTTTGTCATTTTGTTAAAGAGTTTTGGTTTTTGAATTAAAAAAACTTA
1 TCATTTGGTCTAAAAAGTTTT-TCATTTTG-TAAA-AAACTT--TTTTT-ACGTGAGAATAGTT-
* * ** * ** ** *** **
30978 TTTACGTGAGAATTGTTTCTATTGGTTCATGGATGAACTTCCGAAATTGTCAAAGTTTTACGAGT
59 TCT-C-T----ATTGGTTC--TTGG---AT-GA--ACTTCCAAACTTTTCAAACTTT-TACGAGT
* * * ** * *
31043 TCTTTTATAACTTTGGTTCCTTAAAGTGTTCAAGATTATCCTTTCCTTCGATCAATTTTCTGAAC
109 TCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCTGAAC
* *
31108 ATTTAATGCTCGGGAAATTGCA
174 ATTTAATGCTCGAGAAATCGCA
* * *
31130 TCATTTGGTCTAAAAAGTTTTTCATTTTGTAAATAAC-TTTTTTATGTGAGAATAGTTTCTCTCT
1 TCATTTGGTCTAAAAAGTTTTTCATTTTGTAAAAAACTTTTTTTACGTGAGAATAGTTTCTCTAT
** *
31194 TGGTTCTTGGACAAACTTCCAAACTTTTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
66 TGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * *
31259 AAAGTATTTAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATTCTCGAAAAATCGCA
131 AAAGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTCGAGAAATCGCA
* * *
31324 TCCTTTGGTCTAAATAGTTTGTCATTTTGTAAA
1 TCATTTGGTCTAAAAAGTTTTTCATTTTGTAAA
31357 CAAGTTTTGG
Statistics
Matches: 492, Mismatches: 114, Indels: 63
0.74 0.17 0.09
Matches are distributed among these distances:
193 28 0.06
194 235 0.48
195 34 0.07
196 12 0.02
197 7 0.01
198 6 0.01
199 8 0.02
200 2 0.00
201 5 0.01
202 1 0.00
203 6 0.01
206 6 0.01
207 1 0.00
208 1 0.00
209 5 0.01
210 8 0.02
211 5 0.01
212 2 0.00
213 3 0.01
215 14 0.03
216 98 0.20
217 5 0.01
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (195 bp):
TCATTTGGTCTAAAAAGTTTTTCATTTTGTAAAAAACTTTTTTTACGTGAGAATAGTTTCTCTAT
TGGTTCTTGGATGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
AAAGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTCGAGAAATCGCA
Found at i:30957 original size:626 final size:601
Alignment explanation
Indices: 30127--31714 Score: 1682
Period size: 626 Copynumber: 2.6 Consensus size: 601
30117 CTTTGAATTC
* * * *
30127 AAAAC-TTATTTACGTGAGAATAATTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTAAAA
1 AAAACTTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACATGTCAAA
* * * * *
30191 CTTTAACTAGTTCTTTTATAACTTCGGTTCCATAAAGTATTCATGATGATCCATTCCTTCGAA-A
66 CTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTC-AACA
* *
30255 ATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTAGGTCTAAATATTTTGTCATTTTGTAA
130 ATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAA
* * *
30320 ACAAATTTTGGTCTTTGAACTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTTTT-TCTATTGGTTCTTGGA
* * *
30385 CTAACTTCCAAACATGTCAAACTTTTACGAGTTCTTGTATAACTCCGGTTCCTTAAAGTATACAA
258 CTAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT-TATAACTTCGGTTCCTTAAAGTATTCAA
* * *
30450 GATGATCCGTTCCTTCAAGCTATTTT-TAAAACATTTCACGCTCAGGAAATCGCATCATTTGATC
322 GATGATCCATTCCTTCAAGCAATTTTCT-AAACATTTAACGCTCAGGAAATCGCATCATTTGATC
* * * *
30514 TAAATAGTTTGTCATTTGGTAAAAAAGTTTTCATCTTTGAATTAAAAAAAATTATTTACGTGAGA
386 TAAAAAGTTTGTCATTTGGTAAAAAACTTTT--T-TATG---T------AA-GA---A--T-AG-
* ** * * * *
30579 ATTATTTCTATTGGTTCTTGGATGAACTTTCGAACTTTTCAAAGTTTTACGAGTTATTTTACAAC
431 -TT-TCTCTATTGGTTCTTGGACAAACTTCCAAACTTTTAAAACTTTTACGAGTTATTTTACAAC
* * * * *
30644 TTTGGTTCCTTAAAGTATTAAAGACGATCCTTTCCTTTGAGCAATTTTTTTAACATTTAATGCTC
494 TTCGGTTCCTTAAAGTATTAAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTC
* * *
30709 GAGAAATCGCATCATTTGGTCTAAAAAGTTTTTGATTTCGTAA
559 GAAAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTCGTAA
30752 AAAACTTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTC-TGGATGAACTTCCAAACATGTCAAA
1 AAAACTTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACATGTCAAA
* * * * **
30816 CTTTTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATACAGGGCGATCCATTCCTTCAAGCA
66 CTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCAA-CA
* *
30881 ATTTTCCAAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATATTTTGTCATTTTGTTA
130 ATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATATTTTGTCATTTTG-TA
* * * *
30946 AA-GAGTTTTGGTTTTTGAATTAAAAAAACTTATTTACGTGAGAATTGTTTCTATTGGTTCATGG
194 AACAAGTTTTGGTCTTTGAATT--AAAAACTTATTTACGTGAGAATTTTTTCTATTGGTTCTTGG
* * *
31010 A-TGAACTTCCGAAA-TTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTT
257 ACT-AACTTCC-AAACTTGTCAAACTTTTACGAGTTC-TTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * * *
31073 CAAGATTATCCTTTCCTTCGATCAATTTTCTGAACATTTAATGCTCGGGAAATTGCATCATTTGG
319 CAAGATGATCCATTCCTTCAAGCAATTTTCTAAACATTTAACGCTCAGGAAATCGCATCATTTGA
* * * * *
31138 TCTAAAAAGTTTTTCATTTTGTAAATAACTTTTTTATGTGAGAATAGTTTCTCTCTTGGTTCTTG
384 TCTAAAAAGTTTGTCATTTGGTAAAAAACTTTTTTATGTAAGAATAGTTTCTCTATTGGTTCTTG
* * *
31203 GACAAACTTCCAAACTTTTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTT
449 GACAAACTTCCAAACTTTTAAAACTTTTACGAGTTATTTTACAACTTCGGTTCCTTAAAGTATTA
* * *
31268 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATTCTCGAAAAATCGCATCCTTTGGT
514 AAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTCGAAAAATCGCATCATTTGGT
* *
31333 CTAAATAGTTTGTCATTTTGTAA
579 CTAAAAAGTTTGTCATTTCGTAA
* * * * *
31356 ACAAGTTTTGGTCTTTCAATTAAAAACATATTTACGTGACAATTGTTTCTGTCTTCGTTCTTGGA
1 A-AA-------AC--T---TT-------T-TTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGA
* * *
31421 TGAACATCAAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAA
45 TGAACTTCCAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * *
31486 GAAGGTCCATTCCTTCAACAAATTTTTCGAACATTCCATGCAT-GGGAAATCACATCATTTGGTC
110 GAAGATCCATTCCTTCAAC-AATTTTCCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTC
* *
31550 TAAAAAAGTTTT-TCATTTTGTAAACAAGTTTTGGTCTTCGAATTAAAAACTTATTTACGTGAGA
173 T-AAATA-TTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * * ** *
31614 ATTGTATATATTGGTTATTGGACGAACTTCTGAACTTGTAAAACTTTTACGAGTTCCTTTATAAC
236 ATTTTTTCTATTGGTTCTTGGACTAACTTCCAAACTTGTCAAACTTTTACGAGTT-CTTTATAAC
* *
31679 TTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCT
300 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCT
31715 GAGCTATTTT
Statistics
Matches: 813, Mismatches: 110, Indels: 80
0.81 0.11 0.08
Matches are distributed among these distances:
604 146 0.18
605 4 0.00
607 2 0.00
608 1 0.00
610 1 0.00
612 1 0.00
613 1 0.00
614 2 0.00
617 2 0.00
620 1 0.00
623 3 0.00
624 6 0.01
625 208 0.26
626 367 0.45
627 43 0.05
628 25 0.03
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (601 bp):
AAAACTTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACATGTCAAA
CTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTCAACAA
TTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAA
CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTATTGGTTCTTGGACTA
ACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
ATCCATTCCTTCAAGCAATTTTCTAAACATTTAACGCTCAGGAAATCGCATCATTTGATCTAAAA
AGTTTGTCATTTGGTAAAAAACTTTTTTATGTAAGAATAGTTTCTCTATTGGTTCTTGGACAAAC
TTCCAAACTTTTAAAACTTTTACGAGTTATTTTACAACTTCGGTTCCTTAAAGTATTAAAGACGA
TCCATTCCTTCGAGCAATTTTCTGAACATTTAATGCTCGAAAAATCGCATCATTTGGTCTAAAAA
GTTTGTCATTTCGTAA
Found at i:31101 original size:410 final size:408
Alignment explanation
Indices: 30341--31573 Score: 1598
Period size: 410 Copynumber: 3.0 Consensus size: 408
30331 TCTTTGAACT
* **
30341 AAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACTTCCAAACATGTCAAA
1 AAAAACTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGA-TAACTTCCAAACATGTCAAA
* * * * *
30406 CTTTTACGAGTTCTTGTATAACTCCGGTTCCTTAAAGTATACAAGATGATCCGTTCCTTCAAGCT
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATACAAGACGATCCATTCCTTCAAGCA
* * * * * *
30471 ATTTTTAAAACATTTCACGCTCAGGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTGGTAA
130 ATTTTCAAAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTTA
** * *
30536 AAAAGTTTTCATCTTTGAATTAAAAAAAATTATTTACGTGAGAATTATTTCTATTGGTTCTTGGA
195 AAAAGTTTTGGTCTTTGAATTAAAAAAACTTATTTACGTGAGAATTGTTTCTATTGGTTCTTGGA
* * * * *
30601 TGAACTTTCGAACTTTTCAAAGTTTTACGAGTTATTTTACAACTTTGGTTCCTTAAAGTATTAAA
260 TGAAC-TTCGAAATTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * * *
30666 GACGATCCTTTCCTTTGAGCAATTTTTTTAACATTTAATGCTCGAGAAATCGCATCATTTGGTCT
324 GAAGATCCTTTCCTTCGAACAATTTTTTGAACATTTAATGCTCGGGAAATCGCATCATTTGGTCT
* *
30731 AAAAAGTTTTTGATTTCGTA
389 AAAAAGTTTTTCATTTTGTA
30751 AAAAACTTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTC-TGGATGAACTTCCAAACATGTCAA
1 AAAAAC-TTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGAT-AACTTCCAAACATGTCAA
* * *
30815 ACTTTTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATACAGGGCGATCCATTCCTTCAAGC
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATACAAGACGATCCATTCCTTCAAGC
* * * *
30880 AATTTTCCAAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATATTTTGTCATTTTGTT
129 AATTTTCAAAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTT
* * *
30945 AAAGAGTTTTGGTTTTTGAATTAAAAAAACTTATTTACGTGAGAATTGTTTCTATTGGTTCATGG
194 AAAAAGTTTTGGTCTTTGAATTAAAAAAACTTATTTACGTGAGAATTGTTTCTATTGGTTCTTGG
*
31010 ATGAACTTCCGAAATTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTTCA
259 ATGAACTT-CGAAATTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
** * * *
31075 AGATTATCCTTTCCTTCGATCAATTTTCTGAACATTTAATGCTCGGGAAATTGCATCATTTGGTC
323 AGAAGATCCTTTCCTTCGAACAATTTTTTGAACATTTAATGCTCGGGAAATCGCATCATTTGGTC
31140 TAAAAAGTTTTTCATTTTGTA
388 TAAAAAGTTTTTCATTTTGTA
* * * * * *
31161 AATAACTTTTTTATGTGAGAATAGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTTTAAAA
1 AAAAACTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGA-TAACTTCCAAACATGTCAAA
** *
31226 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATACAAGACGATCCATTCCTTCAAGCA
** * ** *
31291 ATTTTCTGAACATTTCATTCTCGAAAAATCGCATCCTTTGGTCTAAATAGTTTGTCATTTTG-TA
130 ATTTTCAAAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTTA
* * * * *
31355 AACAAGTTTTGGTCTTTCAATT--AAAAACATATTTACGTGACAATTGTTTCTGTCTTCGTTCTT
195 AA-AAGTTTTGGTCTTTGAATTAAAAAAACTTATTTACGTGAGAATTGTTTC--TATTGGTTCTT
* * * * *
31418 GGATGAACATCAAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCT-GTTCCTTAAAGTAT
257 GGATGAACTTCGAAA-TTGTCAAAGTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTAT
* * * ** *
31482 TCAAGAAGGTCCATTCCTTC-AACAAATTTTTCGAACATTCCATGCAT-GGGAAATCACATCATT
320 TCAAGAAGATCCTTTCCTTCGAAC-AATTTTTTGAACATTTAATGC-TCGGGAAATCGCATCATT
31545 TGGTCTAAAAAAGTTTTTCATTTTGTA
383 TGGTCT-AAAAAGTTTTTCATTTTGTA
31572 AA
1 AA
31574 CAAGTTTTGG
Statistics
Matches: 720, Mismatches: 90, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
408 26 0.04
409 45 0.06
410 595 0.83
411 54 0.08
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (408 bp):
AAAAACTTTTTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATAACTTCCAAACATGTCAAAC
TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATACAAGACGATCCATTCCTTCAAGCAA
TTTTCAAAACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTTAA
AAAGTTTTGGTCTTTGAATTAAAAAAACTTATTTACGTGAGAATTGTTTCTATTGGTTCTTGGAT
GAACTTCGAAATTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
AGATCCTTTCCTTCGAACAATTTTTTGAACATTTAATGCTCGGGAAATCGCATCATTTGGTCTAA
AAAGTTTTTCATTTTGTA
Found at i:31712 original size:215 final size:215
Alignment explanation
Indices: 31193--31714 Score: 667
Period size: 216 Copynumber: 2.4 Consensus size: 215
31183 AGTTTCTCTC
* * * *
31193 TTGGTTCTTGGACAAACTTCCAAACTTTTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCAAAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT
* * * * *
31258 TAAAGTATTTAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATTCTCGAAAAATCGC
66 TAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTCTGAACATTCCATGCTCGAAAAATCAC
* *
31323 ATCCTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACATATT
131 ATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACATATT
* * *
31388 TACGTGACAATTGTTTCTGTC
196 TACGTGACAATTG-TTATATA
* * * * * * *
31409 TTCGTTCTTGGATGAACATCAAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCTGTTCCT
1 TTGGTTCTTGGACGAACTTCAAAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT
* * **
31474 TAAAGTATTCAAGAAGGTCCATTCCTTC-AACAAATTTT-TCGAACATTCCATGCAT-GGGAAAT
66 TAAAGTATTCAAGACGATCCATTCCTTCGAAC-AATTTTCT-GAACATTCCATGC-TCGAAAAAT
*
31536 CACATCATTTGGTCTAAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGTC-TTCGAATTAAAAAC
128 CACATCATTTGGTCT-AAAAAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTC-AATTAAAAAC
* *
31600 TTATTTACGTGAGAATTG-TATATA
191 ATATTTACGTGACAATTGTTATATA
* ** *
31624 TTGGTTATTGGACGAACTTCTGAACTTGTAAAACTTTTACGAGTTCCTTTATAACTTCAGTTCCT
1 TTGGTTCTTGGACGAACTTCAAAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT
31689 TAAAGTATTCAAGACGATCCATTCCT
66 TAAAGTATTCAAGACGATCCATTCCT
31715 GAGCTATTTT
Statistics
Matches: 261, Mismatches: 40, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
215 84 0.32
216 118 0.45
217 59 0.23
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (215 bp):
TTGGTTCTTGGACGAACTTCAAAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT
TAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTCTGAACATTCCATGCTCGAAAAATCAC
ATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACATATT
TACGTGACAATTGTTATATA
Found at i:32239 original size:32 final size:32
Alignment explanation
Indices: 32203--32265 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
32193 AGCTGAAATT
* * * *
32203 AATTAGTTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAAGTACATGC
32235 AATTAGCTGATTAATATATTTCAAGTACATG
1 AATTAGCTGATTAATATATTTCAAGTACATG
32266 TACAGATGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAAGTACATGC
Found at i:34106 original size:216 final size:216
Alignment explanation
Indices: 33257--36634 Score: 3561
Period size: 216 Copynumber: 15.7 Consensus size: 216
33247 TAAGAAACCG
* * * * **
33257 CATCATTTGGTCTTAATAGTTTTTAATTTTGTAACCAACTTTTGGTCTTCCAATTAAAAACTTAC
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-
** * * *
33322 TTTC-C-TGAGAATTGTTTCTCTCTTATTTCTTGGATGAACTTCCGAACTTGTCAAAATTTTAAG
65 -TTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * *
33385 AGTTCTTTTATAACTTTTGTT-CTGTAAAATATTCACGACGATCCATTCCTTTGAGAAATTTTGT
129 AGTTCTTTTACAACTTTGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCT
* *
33449 GAACATACCATGCTCAGGAAATCG
193 GAACATTCCATGCTCAGGAAATCA
* * * *
33473 CATCATTTGGTTTAAATAGTTTGTCATTTTCTAAACAAGTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * * * *
33538 TTACATGAAAATTGTTTCTCTCTTGGTTCTTCTTAGATGTACTTCCGTATTTGTCAAACTTTTAT
66 TCACTTGAGAATTGTTTCTCTCTTGG---TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * *
33603 GAGCTCTTTTAAAACTTCGGTTCCTTAAAGTGATT-AAGACGATCCATTCCTTCGAGAAATTTTT
128 GAGTTCTTTTACAACTTTGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTTGAGCAATTTTC
* * **
33667 TGAACATTCCATACTCAGTAAATTG
192 TGAACATTCCATGCTCAGGAAATCA
* * * * *
33692 CATCATTTGGTTTAAATAGTTTGCCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * *
33757 TTA-TCTAAGAATTGTCTCTCTCTTGGTTCTTGGACG-A--TCCGAACTTGTCAAACTTTTGCGA
66 TCACT-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * ** *
33818 GTTCTTTTACAACTTCGATTCCTTAAAGTATTCAAGATGATGCATTCCTTAAAGAAATTTTCTGA
130 GTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
*
33883 ACATTCCATGCTCAGAAAATC-
195 ACATTCCATGCTCAGGAAATCA
* * * * *
33904 CTATCATTTGGTCAAAATAGTTTGTCATTCTGTAAACAACTTTTGGTCTTCGAAATAAAAAGTT-
1 C-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
33968 TTACACTTAAGAATTATTTCTCTATCGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTTCG
65 TT-CACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * *
34033 AGTTCTTTTACAACTTTGGTTCTTTAAAGTATTCAAGACAATCAATTCCTTTGAGCGATTTTCCG
129 AGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTG
*
34098 AGCATTCCATGCTC-GAGAAATCA
194 AACATTCCATGCTCAG-GAAATCA
* *
34121 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTA
* ** * ** ** *
34186 TTTA-TGTGAGAATAATTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTCATAAAACTTTTACG
65 TTCACT-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * **
34250 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTCCA
129 AGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTG
* *
34315 AACATTTCATGCTCGGGAAATCA
194 AACATTCCATGCTCAGGAAATCA
* * **
34338 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATGAAAAACAAAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * ** * *
34403 TTACGTGACAATTGTTTCTCTCTTGGTTCTTGGATGAACATCAAAACATGTCAAACTTTTACAAG
66 TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * * * * * *
34468 TTCTTTTATAACTTCT-GTTCGTTAAAGTATTCAAGAAGGTCAATTCC-TTCAACAAATTTTCTG
131 TTCTTTTACAACTT-TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGC-AATTTTCTG
* **
34531 AACTTTCCATGCTTGGGAAATCA
194 AACATTCCATGCTCAGGAAATCA
* * *
34554 CATCATTTGGTCTAAAAATGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * * * *
34619 TTTACGTGAGAATTG--TATATATTGGTTCTTGGACAAATTTTCGAACTAGTAAAACTTTTACGA
65 TTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * ** * * *
34682 GTTCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATTCATT-CTTTCGAGCTATTTTCTT
130 GTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGCAATTTTCTG
* * *
34746 AACATTTCATGCTCAAGAAACCA
194 AACATTCCATGCTCAGGAAATCA
* * * *
34769 CATCATTTGGTCTTAATAGTTTTTAATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTAC
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-
* * * * *
34834 TTTC-C-TGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACATCCAAACTTGTCAAACTTTTACA
65 -TTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * * * * *
34897 AGTTCTTTTATAAATTTTGTTCCGTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTATG
129 AGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTG
* *
34962 AACATACCATGCTCAGGAAAT-T
194 AACATTCCATGCTCAGGAAATCA
* * * * *
34984 GATCATTTGGTTTAAGTAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * * * **
35049 TTACATGAAAATTGTTTCTCTCTTGGTTCTTAGATGTACTTCCGCATTTGTCAAACTTTTGTGAG
66 TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * * * *
35114 CTCTTTTAGAACTTCGGTTCCTTAAAGTGATT-AAGACGATCCATTCCTTCGAGAAATTTT-TCG
131 TTCTTTTACAACTTTGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTTGAGCAATTTTCT-G
* * *
35177 AACATTCCATACTCAGTAAATCT
194 AACATTCCATGCTCAGGAAATCA
* * * * * *
35200 CATCATTTAGTTTAAATAGTTTGCCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * **
35265 TTACCTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTTCCG-ACTTATCAAACTTTTGTGAG
66 TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* ** * *
35329 TTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATGCATTCCTTAAAGAAATTTTCCGAA
131 TTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGAA
*
35394 CATTCCATGCTCAGTAAATC-
196 CATTCCATGCTCAGGAAATCA
* * * * *
35414 CTATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTCGAAATAAAAATTTA
1 C-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * ** **
35479 TACACTTAAGAATTGTTTCTCTCTCAGTTCTTGGACGAACTTCCGAACTAATCAAACTTTTACGA
65 TTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
** * * * **
35544 GTTCTTTTACAACTCCGATTTCTTAAAGTATTCAAGACGATCCATTCCTTTAAGTGATTTTCTGA
130 GTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
*
35609 GCATTCCATGCTC-GAGAAATCA
195 ACATTCCATGCTCAG-GAAATCA
* * * * *
35631 CATAATTTGGTCTAAATAGTTTGTCATGTTGCAAA-ATAGTTTTTGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
35695 TTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGCACGAACTTCTGAACTTGTCAAACTTTTATGA
65 TTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * ** * **
35758 GTTATTTCACAACTTTGGCTCCTTAAAGTATTCAAGACTATCTGTTCCTTTGAGCAATATTCCAA
130 GTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
*
35823 ACATTCCATGCTCGGGAAATCA
195 ACATTCCATGCTCAGGAAATCA
* * *
35845 CATCATTTGGTCTAAATATTTTTTCATTTTGTAAACAAC-TTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * ** * * * *
35909 TTACTTGAAAATTGTTTGGCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACATTTACAAG
66 TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * * *
35974 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAATG-CGATCCATTCCTTTGAACACTTTTTTGA
131 TTCTTTTACAACTTTGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGAGCAATTTTCTGA
* * *
36038 ATATTCCATGCTCGGGAAATCG
195 ACATTCCATGCTCAGGAAATCA
* * * *
36060 CATCATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAACTTTTGTTGTTTCAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * * * **
36125 TTACATGAGAATTATTTCACTCTTGGTTGTTGGACGAACTTTC-AAGCTAGTAAAACTTTTAAAA
66 TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGA
* * * *
36189 GTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGA
130 GTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
*
36254 ACATTCCATGCTCGGGAAATCA
195 ACATTCCATGCTCAGGAAATCA
36276 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
36340 GT-ACGTGAGAATTGTTTCACTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAATTTTTATGA
66 -TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * *
36404 GTTCTTTAACAACTTCGGTTCCTTAAAGTATTCAAGACGTTTCATTCCTTTGAGCAATTTT-TCG
130 GTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCT-G
* *
36468 AACATTCCATGCTCAGGTAATCG
194 AACATTCCATGCTCAGGAAATCA
* * * *
36491 CATCATTTGGTCTAAATATTTTTTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTAA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT-A
* * * *
36556 TT-ACGTGAGAATTGTTTCTCTCTTGGCTCTTGCACGAACATCCGAACTTGTCAAACTTTTACGA
65 TTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
36620 GTT-TTTTCACAACTT
130 GTTCTTTT-ACAACTT
36635 CCGTATTTAA
Statistics
Matches: 2665, Mismatches: 438, Indels: 118
0.83 0.14 0.04
Matches are distributed among these distances:
212 6 0.00
213 209 0.08
214 203 0.08
215 810 0.30
216 1001 0.38
217 245 0.09
218 3 0.00
219 183 0.07
220 5 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
TTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGAA
CATTCCATGCTCAGGAAATCA
Found at i:34849 original size:431 final size:429
Alignment explanation
Indices: 33257--36634 Score: 3562
Period size: 431 Copynumber: 7.8 Consensus size: 429
33247 TAAGAAACCG
* * * * **
33257 CATCATTTGGTCTTAATAGTTTTTAATTTTGTAACCAACTTTTGGTCTTCCAATTAAAAACTTAC
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-
* ** * * *
33322 TTT-CCTGAGAATTGTTTCTCTCTTATTTCTTGGATGAACTTCCGAACTTGTCAAAATTTTAAGA
65 TTTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
** * * * *
33386 GTTCTTTTATAACTTTTGTT-CTGTAAAATATTCACGACGATCCATTCCTTTGAGAAATTTTGTG
128 GTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTG
* * * * *
33450 AACATACCATGCTCAGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTCTAAACAAGTTT
192 AACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * *
33515 TAGTCTTTGAATTAAAAACTTATTTACATGAAAATTGTTTCTCTCTTGGTTCTTCTTAGATGTAC
257 TGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGG---TTCTTGGACGAAC
* * * * * *
33580 TTCCGTATTTGTCAAACTTTTATGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTGATT-AAGACG
319 TT-CGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGT-ATTCAAGACG
* * ** * * * **
33644 ATCCATTCCTTCGAGAAATTTTTTGAACATTCCATACTCAGTAAATTG
382 ATCCATTCCTTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
* * * * *
33692 CATCATTTGGTTTAAATAGTTTGCCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* *
33757 TTATC-TAAGAATTGTCTCTCTCTTGGTTCTTGGACG-A--TCCGAACTTGTCAAACTTTTGCGA
66 TTA-CGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * ** *
33818 GTTCTTTTACAACTTCGATTCCTTAAAGTATTCAAGATGATGCATTCCTTAAAGAAATTTTCTGA
128 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
* * *
33883 ACATTCCATGCTC-AGAAAATC-CTATCATTTGGTCAAAATAGTTTGTCATTCTGTAAACAACTT
193 ACATTCCATGCTCAAG-AAATCAC-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * * * *
33946 TTGGTCTTCGAAATAAAAA-GT-TTTACACTTAAGAATTATTTCTCTATCGGTTCTTGGACGAAC
256 TTGGTCTTTGAATTAAAAACTTATTTAC-C-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
34009 TTTCGAACTAGTCAAACTTTTTCGAGTTCTTTTACAACTTTGGTTCTTTAAAGTATTCAAGACAA
319 -TTCGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGA
* * * * * *
34074 TCAATTCCTTTGAGC-GATTTTCCGAGCATTCCATGCTCGAGAAATCA
383 TCCATTCC-TTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
* *
34121 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * ** ** *
34186 TTTATGTGAGAATAATTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTCATAAAACTTTTACGA
65 TTTACGTGAGAAT--TGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * **
34251 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTCCAA
128 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
* **
34316 ACATTTCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
193 ACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* ** * * * *
34381 GGTCTTTGAATGAAAAACAAATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGATGAACATCA
258 GGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-
* * * * * * * *
34446 AAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCT-GTTCGTTAAAGTATTCAAGAAGGTCA
322 GAACTTGTCAAACTTTTACGAGTTCTTTTACAACTT-TGGTTCCTTAAAGTATTCAAGACGATCC
* * *
34510 ATTCCTTCAACAAATTTTCTGAACTTTCCATGCTTGGGAAATCA
386 ATTCCTTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
* * *
34554 CATCATTTGGTCTAAAAATGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * *
34619 TTTACGTGAGAATTGTATATATTGGTTCTTGGACAAATTTTCGAACTAGTAAAACTTTTACGAGT
65 TTTACGTGAGAATTGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * * *
34684 TCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATTCATT-CTTTCGAGCTATTTTCTTAA
130 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGCAATTTTCTGAA
* * * * * *
34748 CATTTCATGCTCAAGAAACCACATCATTTGGTCTTAATAGTTTTTAATTTTGTAAACAACTTTTG
194 CATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * *
34813 GTCTTCGAATTAAAAACTTACTTT-CCTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACATCC
259 GTCTTTGAATTAAAAACTTA-TTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTC
* * * * * *
34877 AAACTTGTCAAACTTTTACAAGTTCTTTTATAAATTTTGTTCCGTAAAGTATTCAAGACGATCCA
322 GAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * ** * * *
34942 TTCCTTCGAGAAATTTTATGAACATACCATGCTCAGGAAAT-T
387 TTCCTTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
* * * * *
34984 GATCATTTGGTTTAAGTAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * * **
35049 TTACATGAAAATTGTTTCTCTCTTGGTTCTTAGATGTACTTCCGCATTTGTCAAACTTTTGTGAG
66 TTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * * *
35114 CTCTTTTAGAACTTCGGTTCCTTAAAGTGATT-AAGACGATCCATTCCTTCGAGAAATTTT-TCG
129 TTCTTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTTGAGCAATTTTCT-G
* * * * * *
35177 AACATTCCATACTC-AGTAAATCTCATCATTTAGTTTAAATAGTTTGCCAATTTGTAAACAAGTT
192 AACATTCCATGCTCAAG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
35241 TTAGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTT
256 TTGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* ** *
35306 CCG-ACTTATCAAACTTTTGTGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATG
321 -CGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * * *
35370 CATTCCTTAAAGAAATTTTCCGAACATTCCATGCTCAGTAAATC-
385 CATTCCTTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
* * * * *
35414 CTATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTCGAAATAAAAATTTA
1 C-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
** * * ** **
35479 TACACTTAAGAATTGTTTCTCTCTCAGTTCTTGGACGAACTTCCGAACTAATCAAACTTTTACGA
65 TTTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * **
35544 GTTCTTTTACAACTCCGATTTCTTAAAGTATTCAAGACGATCCATTCCTTTAAGTGATTTTCTGA
128 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGA
* * * * *
35609 GCATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATGTTGCAAA-ATAGTTT
193 ACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTT
* * *
35673 TTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGCACGAACTTC
257 TGGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * *
35736 TGAACTTGTCAAACTTTTATGAGTTATTTCACAACTTTGGCTCCTTAAAGTATTCAAGACTATCT
322 -GAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
35801 GTTCCTTTGAGC-AATATTCCAAACATTCCATGCTCGGGAAATCA
386 ATTCC-TTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
* * *
35845 CATCATTTGGTCTAAATATTTTTTCATTTTGTAAACAAC-TTTAGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * *
35909 TTACTTGAAAATTGTTTGGCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACATTTACAAG
66 TTACGTGAGAATTGTCT--CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * * *
35974 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAATG-CGATCCATTCCTTTGAACACTTTTTTGA
129 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTTGAGCAATTTTCTGA
* ** * * *
36038 ATATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAACTTTT
193 ACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * * *
36103 GTTGTTTCAATTAAAAACTTATTTACATGAGAATTATTTCACTCTTGGTTGTTGGACGAACTTTC
258 GGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTC
* * ** * *
36168 -AAGCTAGTAAAACTTTTAAAAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
322 GAA-CTTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
*
36232 ATTCCTTCGAGC-AATTTTCCGAACATTCCATGCTCGGGAAATCA
386 ATTCCTTC-AACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
36276 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
36340 GTACGTGAGAATTGTTTCACTCTTGGTTCTTGCACAAACTTCCGAACTTGTCAAATTTTTATGAG
66 TTACGTGAGAATTG--TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * * *
36405 TTCTTTAACAACTTCGGTTCCTTAAAGTATTCAAGACGTTTCATTCCTTTGAGCAATTTT-TCGA
129 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCT-GA
* * * * *
36469 ACATTCCATGCTCAGGTAATCGCATCATTTGGTCTAAATATTTTTTCATTTTGTAAACAAGTTTT
193 ACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * *
36534 GGTGTTTGAATTAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGCTCTTGCACGAACATCC
258 GGTCTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTC
36599 GAACTTGTCAAACTTTTACGAGTT-TTTTCACAACTT
322 GAACTTGTCAAACTTTTACGAGTTCTTTT-ACAACTT
36635 CCGTATTTAA
Statistics
Matches: 2446, Mismatches: 435, Indels: 128
0.81 0.14 0.04
Matches are distributed among these distances:
427 2 0.00
428 4 0.00
429 399 0.16
430 319 0.13
431 1121 0.46
432 181 0.07
433 315 0.13
434 20 0.01
435 84 0.03
436 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (429 bp):
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTCTGAACA
TTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
CTTTGAATTAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAAC
TTGTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCC
TTCAACAAATTTTCCGAACATTCCATGCTCGGGAAATCA
Found at i:36738 original size:15 final size:15
Alignment explanation
Indices: 36718--36752 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
36708 GTTTGGAAGA
36718 TGCGAGCACT-AGTGT
1 TGCGAGCACTCA-TGT
36733 TGCGAGCACTCATGT
1 TGCGAGCACTCATGT
36748 TGCGA
1 TGCGA
36753 ACATTGGAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 18 0.95
16 1 0.05
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (15 bp):
TGCGAGCACTCATGT
Found at i:38948 original size:190 final size:189
Alignment explanation
Indices: 38596--38948 Score: 485
Period size: 190 Copynumber: 1.9 Consensus size: 189
38586 TCTCACGTAA
* * *
38596 ATAAATTTTTAATTCAAAGAAGAAAGTTGTTTACAAAATGAAAAAATATTTAGACCGAATGATTC
1 ATAAATTTTTAATTCAAAGAACAAAGTTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGC
* * * *
38661 GATTTCCCAAGCATTGAATGTTCGAAAAATTACTGAAAGGAATTAATCTTCTTAAATACTTTAAG
66 GATTTCCCAAGCATGGAATGCTCGAAAAATTACTGAAAGAAATGAATCTTCTTAAATACTTTAAG
* *
38726 GAATCGAAGTTGTGGAAGAACTCATGAAAGTTTACAAGTTTGGAATTTCGTGCAAGAATC
131 GAATCGAAGTTATGG-AGAACTCATAAAAGTTTACAAGTTTGGAATTTCGTGCAAGAATC
* * * * *
38786 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAGACTATTTAGACCAAATGATGC
1 ATAAATTTTTAATTCAAAGAACAAAGTTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGC
* * * *
38851 GATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCG-AAGAAATGGATCTTCTTGAATACTTTAA
66 GATTTCCCAAGCATGGAATGCTCGAAAAATTACT-GAAAGAAATGAATCTTCTTAAATACTTTAA
*
38915 GGAATCGAAGTTATAAGG-GAACTCGTAAAAGTTT
130 GGAATCGAAGTTAT--GGAGAACTCATAAAAGTTT
38949 TACTAATTTA
Statistics
Matches: 141, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
190 138 0.98
191 1 0.01
192 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (189 bp):
ATAAATTTTTAATTCAAAGAACAAAGTTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGC
GATTTCCCAAGCATGGAATGCTCGAAAAATTACTGAAAGAAATGAATCTTCTTAAATACTTTAAG
GAATCGAAGTTATGGAGAACTCATAAAAGTTTACAAGTTTGGAATTTCGTGCAAGAATC
Found at i:39161 original size:215 final size:213
Alignment explanation
Indices: 38786--40655 Score: 1893
Period size: 215 Copynumber: 8.8 Consensus size: 213
38776 TGCAAGAATC
* * * *
38786 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAGACTATTTAGACCAAATGATGC
1 ATAAGTTTTTAATTAAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * *
38851 GATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAAGAAATGGATCTTCTTGAATACTTTAAG
66 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAG
** * * * * *
38916 GAA-TCGAAGTTATAAGGGAACTCGTAAAAGTTTTACTAA-TTTAGAAGTTCATCCACGAATCAA
130 GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AAGTTCAGAAGTTCGTCCAAGAACCAA
* * * * *
38979 GACTGAAATAATTCTCATGGAT
193 GA-AGAAACAATTCTCACGTAA
* *
39001 TTAAGTTTTT-ATTGAAAAAACAAAAGTTGTTTACAAAATGACAAACTACTTAGACCAAATGATG
1 ATAAGTTTTTAATT-AAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * *
39065 CGATTTCCCAAGCATGGAATGTTCGAAAAATTGTTCCAAGGAATGGATCGCATTGAATACTTTAA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGC-TTGAATACTTTAA
**
39130 GGAACTGAAGTTATAAAAGAACTAATAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
129 GGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
* *
39195 ATCGAAACAATTTTCACGTAA
194 A-AGAAACAATTCTCACGTAA
* * * *
39216 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGC
1 ATAAGTTTTTAATTAAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * *
39281 AATTTCCCGAGCATGAAATGTTCGAAAAATTGTTTGAAGAAATGAATCGTCTTGAATACTTTAAG
66 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAG
* * *
39346 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAGAAGTTCGGAAGTCCGTCCAAGAACCAAGA
130 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA
**
39411 GAGAAATTATTCTCACGTAA
195 -AGAAACAATTCTCACGTAA
* * * *
39431 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTGACAAAATGAAAAACTATTTAGA-C-------G
1 ATAAGTTTTTAATT-AAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * *
39488 CGATTTCTCAAGCATGGAATGTTC-AAAATATTGCTCGAAGGAATGGATCATCTTGAATACTATA
65 CGATTTCCCGAGCATGGAATGTTCGAAAA-ATTGCTCGAAGGAATGGATC-GCTTGAATACTTTA
* * * * * *
39552 AGGAA-TCGAAATTATAAAATAACTTGCAAAAGTTTAACAAGTTC-GAAAGTTCATCCAAGAA-C
128 AGGAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACC
* *
39614 AACGAAAGAAACAATTTTCTCGTAA
191 AA-G-AAGAAACAATTCTCACGTAA
* * * * * * *
39639 ATAAGTTTTTAATTTAAAGACCAAAGTTGTTTACAAAATTACAAAATATTTATACCAAATGATGT
1 ATAAGTTTTTAATTAAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * *
39704 GATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCTAAGGAATTGATCGTCTTGAATACTTTAA
66 GATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAA
* * * ** * * * * *
39768 GGAATTGAAGTTGTGAAAGAACTTATAATAGTTTAACTAGTTCAGAAGTTAGTCCAAGAACAAAG
129 GGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
*
39833 AGAGAAATC-ATTCTCATGTAA
194 A-AGAAA-CAATTCTCACGTAA
* * * * *
39854 ATAAATTTTTAATTCAAAGAA-GAAAGTTGTTTACAAAATGAAAAAATATTTA-ACCAAATGATG
1 ATAAGTTTTTAATT-AAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* ** * ** * * *
39917 TGATTTCCAAAGCATTGAATGTTCGGGAAATTACT-GAAAGGAATTGATCTTCTTGAATACTTTA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGATC-GCTTGAATACTTTA
* * * *
39981 AGGAACTGAAGTTGTGAAAA-AACACGTAAAAGTTTGACAAGTT-TGAAAGTTCGTGCAAG-A--
128 AGGAACTGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACC
*
40041 AAG-AGAAACAATTCTCACGCAA
191 AAGAAGAAACAATTCTCACGTAA
* * * * * * *
40063 ATAAATTTTTAATTCATAGACAAAAACTTGTTTGCAAAATGACAAATTATTTAGACCAAATGATG
1 ATAAGTTTTTAATTAAAAAAC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * ** * *
40128 TGATTTCCCGAGCATGGAATTTTTGGCAAATTGCTCGAAGGAAAGGATCATCTTGAATACTTTAA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAA
* * * *
40193 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT-GGAAGTTTGTCCAAGAACCAAG
129 GGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
*
40257 -AGAAA-AATTCTCACATAA
194 AAGAAACAATTCTCACGTAA
* * * *
40275 ATAAGTTTTTAATTGAAAGACCAAAAGTTTTTTACAAAATGACAAACTATTTAGACCAAATTATG
1 ATAAGTTTTTAATT-AAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * * *
40340 TGGTTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAAAGGAGTGGATTGTCTTGAATGCTTTAA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAA
* * * *
40405 GGAACCGAAGTTGTAAAAAAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAG
129 GGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAG
* * *
40470 AGAGAAACAATTCTTAAGTAT
194 A-AGAAACAATTCTCACGTAA
* *
40491 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC---T-AT-
1 ATAAGTTTTTAATT-AAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
** * *
40551 -GATTTTACAAGCATGGAATGTTCGAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAA
* * * *
40615 GGAACCGAAGTTGTAAAAGAACTTGTAAAAGTTTAACAAGT
129 GGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
40656 GATGCGAGCT
Statistics
Matches: 1390, Mismatches: 215, Indels: 105
0.81 0.13 0.06
Matches are distributed among these distances:
207 39 0.03
208 132 0.09
209 30 0.02
210 133 0.10
211 102 0.07
212 156 0.11
213 34 0.02
214 112 0.08
215 540 0.39
216 112 0.08
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (213 bp):
ATAAGTTTTTAATTAAAAAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCTTGAATACTTTAAGG
AACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAA
GAAACAATTCTCACGTAA
Found at i:39688 original size:423 final size:421
Alignment explanation
Indices: 38786--40648 Score: 1997
Period size: 423 Copynumber: 4.4 Consensus size: 421
38776 TGCAAGAATC
* *
38786 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAGACTATTTAGACCAAATGATGC
1 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGC
* * *
38851 GATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAAGAAATGGATCTTCTTGAATACTTTAAG
66 GATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAG
** * * * * * *
38916 GAA-TCGAAGTTATAAGGGAACTCGTAAAAGTTTTACTAA-TTTAGAAGTTCATCCACGAATCAA
131 GAACT-GAAGTTATAAAAGAACTCGTAAAAGTTTGA-AAAGTTCAGAAGTTCGTCCAAGAACCAA
** * * ** * * * *
38979 GACTGAAATAATTCTCATGGATTTAAGTTTTT-ATTGAAAAAACAAAAGTTGTTTACAAAATGAC
194 GAGAGAAAT-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAA
* * *
39043 AAACTACTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGTTCCAAGGAA
258 AAACTATTTAGACC-----A-GCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* **
39108 TGGATCGCATTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTAATAAAAGTTTGACAAGTTC
317 TGGATCTC-TTGAATACTTTAAGGAACTGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTC
*
39173 -AGAAGTTCGTCCAAGAACCAAGATCGAAACAATTTTCACGTAA
380 GA-AAGTTCGTCCAAGAACCAAGA-AGAAACAATTTTCACGTAA
39216 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGC
1 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGC
* * * *
39281 AATTTCCCGAGCATGAAATGTTCGAAAAATTGTTTGAAGAAATGAATCGTCTTGAATACTTTAAG
66 GATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAG
* * *
39346 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAGAAGTTCGGAAGTCCGTCCAAGAACCAAGA
131 GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGAAGTTCGTCCAAGAACCAAGA
*
39411 GAGAAATTATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTGACAAAATGAAAA
196 GAGAAA-TATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
*
39476 ACTATTTAGA-C-GCGATTTCTCAAGCATGGAATGTTC-AAAATATTGCTCGAAGGAATGGATCA
260 ACTATTTAGACCAGCGATTTCCCAAGCATGGAATGTTCGAAAA-ATTGCTCGAAGGAATGGATC-
* * * * *
39538 TCTTGAATACTATAAGGAA-TCGAAATTATAAAATAACTTGCAAAAGTTTAACAAGTTCGAAAGT
323 TCTTGAATACTTTAAGGAACT-GAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGTTCGAAAGT
* *
39602 TCATCCAAGAA-CAACGAAAGAAACAATTTTCTCGTAA
386 TCGTCCAAGAACCAA-G-AAGAAACAATTTTCACGTAA
* * * *
39639 ATAAGTTTTTAATTTAAAGACCAAAGTTGTTTACAAAATTACAAAATATTTATACCAAATGATGT
1 ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGC
* * * * *
39704 GATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCTAAGGAATTGATCGTCTTGAATACTTTAA
66 GATTTCCCGAGCATGGAATGTTCGA-AAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAA
* * * ** * * * *
39768 GGAATTGAAGTTGTGAAAGAACTTATAATAGTTT-AACTAGTTCAGAAGTTAGTCCAAGAACAAA
130 GGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAA-AAGTTCAGAAGTTCGTCCAAGAACCAA
* *
39832 GAGAGAAATCATTCTCATGTAAATAAATTTTTAATTCAAAGA--AGAAAGTTGTTTACAAAATGA
194 GAGAGAAAT-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGA
* * * * ** *
39895 AAAAATATTTA-ACCAAATGATGTGATTTCCAAAGCATTGAATGTTCGGGAAATTACT-GAAAGG
257 AAAACTATTTAGACC-----A-GCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCG-AAGG
* * *
39958 AATTGATCTTCTTGAATACTTTAAGGAACTGAAGTTGTGAAAAAACACGTAAAAGTTTGACAAGT
315 AATGGATC-TCTTGAATACTTTAAGGAACTGAAGTTAT-AAAAAACTCGTAAAAGTTTGACAAGT
* * * *
40023 TTGAAAGTTCGTGCAAG-A--AAG-AGAAACAATTCTCACGCAA
378 TCGAAAGTTCGTCCAAGAACCAAGAAGAAACAATTTTCACGTAA
* * * * * *
40063 ATAAATTTTTAATTCATAGACAAAAACTTGTTTGCAAAATGACAAATTATTTAGACCAAATGATG
1 ATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATG
* * * ** * *
40128 TGATTTCCCGAGCATGGAATTTTTGGCAAATTGCTCGAAGGAAA-GGATCATCTTGAATACTTTA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAA-GAAATGGATCGTCTTGAATACTTTA
* * *
40192 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT-GGAAGTTTGTCCAAGAACCAA
129 AGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGAAGTTCGTCCAAGAACCAA
* * * *
40256 GAGA-AAA-ATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAAAGTTTTTTACAAAATGACA
194 GAGAGAAATATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAA
* * * * * *
40319 AACTATTTAGACCAAATTATGTGGTTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAAAGGAGT
259 AACTATTTAGACC-----A-GCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * *
40384 GGATTGTCTTGAATGCTTTAAGGAACCGAAGTTGTAAAAAAACTCGTAAAAGTTTGACAAGTTCG
318 GGA-TCTCTTGAATACTTTAAGGAACTGAAGTTAT-AAAAAACTCGTAAAAGTTTGACAAGTTCG
* * *
40449 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT-AAGTAT
381 AAAGTTCGTCCAAGAACCAAGA-AGAAACAATT-TTCACGTAA
*
40491 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC---T-AT-
1 ATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATG
** * *
40551 -GATTTTACAAGCATGGAATGTTCGAAAAATT-TCTCGAAGGAATGGATCGTCTTGAATACTTTA
65 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGT-TCGAAGAAATGGATCGTCTTGAATACTTTA
* * *
40614 AGGAACCGAAGTTGTAAAAGAACTTGTAAAAGTTT
129 AGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTT
40649 AACAAGTGAT
Statistics
Matches: 1216, Mismatches: 173, Indels: 96
0.82 0.12 0.06
Matches are distributed among these distances:
421 33 0.03
422 148 0.12
423 438 0.36
424 63 0.05
425 121 0.10
426 9 0.01
427 2 0.00
428 65 0.05
429 96 0.08
430 201 0.17
431 40 0.03
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (421 bp):
ATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGC
GATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGAAATGGATCGTCTTGAATACTTTAAG
GAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGAAGTTCGTCCAAGAACCAAGA
GAGAAATATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
CTATTTAGACCAGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTCT
TGAATACTTTAAGGAACTGAAGTTATAAAAAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
CAAGAACCAAGAAGAAACAATTTTCACGTAA
Found at i:39724 original size:638 final size:626
Alignment explanation
Indices: 38786--40655 Score: 2110
Period size: 638 Copynumber: 2.9 Consensus size: 626
38776 TGCAAGAATC
* *
38786 ATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAGACTATTTAGACCAAATGATG
1 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTGACAAAATGACAAACTATTTAGACC-----A-G
* * *
38850 CGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCGAAGAAATGGATCTTCTTGAATACTTTAA
60 CGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAA
** * * *
38915 GGAATCGAAGTTATAAGGGAACTCGTAAAAGTTTTACTAATTTAGAAGTTCATCCACGAATCAA-
124 GGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTAAC-AAGTT-GAAGTTCATCCAAGAA-CAAC
** * ** * *
38979 GACTGAAATAATTCTCAT-GGATTTAAGTTTTT-ATTGAAAAAACAAAAGTTGTTTACAAAATGA
186 GAAAGAAA-AATTCTC-TCGTAAATAAGTTTTTAATT-AAAAGACCAAAGTTGTTTACAAAATGA
* * * * *
39042 CAAACTACTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGTTCCAAGGA
248 CAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGA
*
39107 ATGGATCG-CATTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTAATAAAAGTTTGACAAGT
313 ATGGATCGTC-TTGAATACTTTAAGGAACTGAAGTTGTAAAAGAACTAATAAAAGTTTGACAAGT
** *
39171 TCAGAAGTTCGTCCAAGAACCAAGATCGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGA
377 TCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCAAGTAAATAAGTTTTTAATTCAAAGA
*
39236 CCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCAATTTCCCGAGCATGAAATG
442 CCAAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATG--ATTTCCCAAGCATG-AATG
*
39301 TTCGAAAAATTGTTTGAAGAAATGAATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
504 TTCGAAAAATT-TTTGAAGAAATG-ATCGTCTTGAATACTTTAAGGAACTGAAGTTGTAAAAGAA
* * *
39366 CTCGTAAAAGTTTGAGAAGTTCGGAAGTCCGTCCAAGAACCAAGAGAGAA-ATTATTCTCACGTA
567 CTCGTAAAAGTTTGACAAGTTCGAAAGTCCGTCCAAG-A--AAGAGA-AACA--ATTCTCACGCA
39430 A
626 A
*
39431 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTGACAAAATGAAAAACTATTTAGA-C-GCGATTT
1 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTGACAAAATGACAAACTATTTAGACCAGCGATTT
* * *
39494 CTCAAGCATGGAATGTTCAAAATATTGCTCGAAGGAATGGATCATCTTGAATACTATAAGGAATC
66 CCCGAGCATGGAATGTTCAAAA-ATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC
* * * *
39559 GAAATTATAAAATAACTTGCAAAAGTTTAACAAGTTCGAAAGTTCATCCAAGAACAACGAAAGAA
130 GAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTT-G-AAGTTCATCCAAGAACAACGAAAGAA
* * * *
39624 ACAATTTTCTCGTAAATAAGTTTTTAATTTAAAGACCAAAGTTGTTTACAAAATTACAAAATATT
193 A-AATTCTCTCGTAAATAAGTTTTTAATTAAAAGACCAAAGTTGTTTACAAAATGACAAACTATT
* * * *
39689 TATACCAAATGATGTGATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCTAAGGAATTGATCG
257 TAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCG
* * * * * *
39753 TCTTGAATACTTTAAGGAATTGAAGTTGTGAAAGAACTTATAATAGTTTAACTAGTTCAGAAGTT
321 TCTTGAATACTTTAAGGAACTGAAGTTGTAAAAGAACTAATAAAAGTTTGACAAGTTCAGAAGTT
* * * * * **
39818 AGTCCAAGAACAAAGAGAGAAATC-ATTCTCATGTAAATAAATTTTTAATTCAAAGAAGAAAGTT
386 CGTCCAAGAACCAAGAGAGAAA-CAATTTTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAGTT
* * **
39882 GTTTACAAAATGAAAAAATATTTA-ACCAAATGATGTGATTTCCAAAGCATTGAATGTTCGGGAA
450 GTTTACAAAATGACAAAATATTTAGACCAAATGA--TGATTTCCCAAGCA-TGAATGTTCGAAAA
** * * *
39946 ATTACTGAAAGGAATTGATCTTCTTGAATACTTTAAGGAACTGAAGTTGTGAAAA-AACACGTAA
512 ATTTTTG-AA-GAAATGATCGTCTTGAATACTTTAAGGAACTGAAGTTGT-AAAAGAACTCGTAA
* * *
40010 AAGTTTGACAAGTTTGAAAGTTCGTGCAAGAAAGAGAAACAATTCTCACGCAA
574 AAGTTTGACAAGTTCGAAAGTCCGTCCAAGAAAGAGAAACAATTCTCACGCAA
* * * * *
40063 ATAAATTTTTAATTCATAGACAAAAACTTGTTTG-CAAAATGACAAATTATTTAGACCAAATGAT
1 ATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTGACAAAATGACAAACTATTTAGACC-----A-
* * *** *
40127 GTGATTTCCCGAGCATGGAATTTTTGGCAAATTGCTCGAAGGAAAGGATCATCTTGAATACTTTA
59 GCGATTTCCCGAGCATGGAA-TGTTCAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTA
* **
40192 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAA-AAGTTGGAAGTTTGTCCAAGAAC--C
123 AGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTT-AACAAGTT-GAAGTTCATCCAAGAACAAC
* * * *
40254 -AAGAGAAAAATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAAAGTTTTTTACAAAATGAC
186 GAA-AGAAAAATTCTCTCGTAAATAAGTTTTTAATTAAAAGACC-AAAGTTGTTTACAAAATGAC
* * * *
40318 AAACTATTTAGACCAAATTATGTGGTTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAAAGGAG
249 AAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAA
* * * * **
40383 TGGATTGTCTTGAATGCTTTAAGGAACCGAAGTTGTAAAAAAACTCGTAAAAGTTTGACAAGTTC
314 TGGATCGTCTTGAATACTTTAAGGAACTGAAGTTGTAAAAGAACTAATAAAAGTTTGACAAGTTC
* *
40448 GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT-AAGTATATAAGTTTTTAATTCAAAGAC
379 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TTCAAGTAAATAAGTTTTTAATTCAAAGAC
* **
40512 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACC---T-ATGATTTTACAAGCATGGAATGTT
443 C-AAAGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGATTTCCCAAGCAT-GAATGTT
* * *
40573 CGAAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGAACT
506 CGAAAAATTT-TTGAAGAAAT-GATCGTCTTGAATACTTTAAGGAACTGAAGTTGTAAAAGAACT
* *
40638 TGTAAAAGTTTAACAAGT
569 CGTAAAAGTTTGACAAGT
40656 GATGCGAGCT
Statistics
Matches: 1040, Mismatches: 147, Indels: 88
0.82 0.12 0.07
Matches are distributed among these distances:
632 64 0.06
633 84 0.08
634 8 0.01
635 1 0.00
636 38 0.04
637 296 0.28
638 380 0.37
639 24 0.02
640 86 0.08
641 7 0.01
645 23 0.02
646 29 0.03
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (626 bp):
ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTGACAAAATGACAAACTATTTAGACCAGCGATTT
CCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCG
AAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTGAAGTTCATCCAAGAACAACGAAAGAAAAA
TTCTCTCGTAAATAAGTTTTTAATTAAAAGACCAAAGTTGTTTACAAAATGACAAACTATTTAGA
CCAAATGATGTGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTG
AATACTTTAAGGAACTGAAGTTGTAAAAGAACTAATAAAAGTTTGACAAGTTCAGAAGTTCGTCC
AAGAACCAAGAGAGAAACAATTTTCAAGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTAC
AAAATGACAAAATATTTAGACCAAATGATGATTTCCCAAGCATGAATGTTCGAAAAATTTTTGAA
GAAATGATCGTCTTGAATACTTTAAGGAACTGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAG
TTCGAAAGTCCGTCCAAGAAAGAGAAACAATTCTCACGCAA
Found at i:46980 original size:3 final size:3
Alignment explanation
Indices: 46972--46996 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
46962 TTCAACTAGC
46972 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
46997 TTTTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:48976 original size:215 final size:216
Alignment explanation
Indices: 48580--50378 Score: 1938
Period size: 215 Copynumber: 8.4 Consensus size: 216
48570 GCTCACATCA
* * * * * * * *
48580 ACAAGTGCGAAAGTTTGTCTAAGAGCCAAGAGAGAGACAATTCACATGTAAATAAGTTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * *** *
48645 CAAAGACTAAAACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATGCGATTTATTGAGTA
66 CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
** * * * * * ** *
48710 TGGAATGTTCGGAAAATTTTTCGAAGGAATGTATCGTCTTAAACACTTTACGGAA-TGAAGTTCT
131 TGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTTAAGGAACCAAAGTTAT
**
48774 AAAAGTGCTCGTAAAAGTTTG
196 AAAAGAACTCGTAAAAGTTTG
* * * * * *
48795 ACAAATGCGGAAGTACATCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* ** * *
48860 CAAAGACTAAAACTTGTTTACAAAATGTCAAACTATTTAAACCAAATGATGTGATTTCCTGAGCA
66 CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* ** * * *
48925 TGGTATGTTCAAAAAATTTCTCGAAGGAATCGG-TCGACTTGAATTCTTTACGGAACCAAAGTTA
131 TGGAATGTTCGGAAAATTGCTCGAAGGAAT-GGATCGACTTGAATACTTTAAGGAACCAAAGTTA
* *
48989 TAAAAAAAACTTGTAAAAGTTTG
195 T-AAAAGAACTCGTAAAAGTTTG
* * * * *
49012 ACAAGTTCGGAAGTTTG-CCTAAGAAACAAGAGAGAAACAATTCTCAGGAAAATAA-ATTTTAAT
1 ACAAGTTCGGAAGTTCGTCC-AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * *
49075 TCCAAGACCAAAAGTTGTTTACAAAATGAAAAA-TA-TTAAGACCAAATGAGGCAATTTCCCGAG
65 TCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAA-ACCAAATGATGCGATTTCCCGAG
* * * * * * * *
49138 CATGAAATGTTAGGAAAGTAGTTCGAAGGAATGGATCGTCTTGAATACGTTAAGGAACCCAAGTT
129 CATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTTAAGGAACCAAAGTT
* * * *
49203 ATAAAGGAACTCGCAAAAATTTT
194 ATAAAAGAACTCGTAAAAGTTTG
* * *
49226 ACAAGTTCGGAAGTTCGT-CAAGAACC-A-ATAGATACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * *
49288 CAAAGACCAAAACTTGTTTCCAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGCA
66 CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* * * *
49353 TGGAATGTTCGAAAAATTGATTGAAGGAATGGA-CTATCTTGAATACTTTAAGGAACCAAAGTTA
131 TGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGA-CTTGAATACTTTAAGGAACCAAAGTTA
*
49417 TAAAAGAACTCGTAAAACTTTG
195 TAAAAGAACTCGTAAAAGTTTG
* * ** * **
49439 ATATGTTTTGAAATTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * * * *
49504 CAAAGACAAAAACTTGCTTGCAAAATGACAAACTGTTTAGACCAAATGATGCGATTTCCCAAGCA
66 CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* * * *
49569 TGGAATTTTTC-GAAAATTGCTCAAAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
131 TGGAA-TGTTCGGAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTTAAGGAACCAAAGTTA
* *
49633 TAAAAGAACTTGTAAAAGTCTG
195 TAAAAGAACTCGTAAAAGTTTG
* * *
49655 AGAAGTT-GGAAGTTCGTCCAAGAATCAAGAGA-AAA-AATTTTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * * *
49717 CAAAGACCAAAAGTTTTTTACAAAATGAAAAACTACTTAGACCAAATGATGCAATTTCTCGAGCA
66 CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* * * * *
49782 TGGAATGTTC-AAAATATTGCTCAAAGGAATGGATC-ATCTTAAATACTATAAGGAATCGAAA-T
131 TGGAATGTTCGGAAA-ATTGCTCGAAGGAATGGATCGA-CTTGAATACTTTAAGGAA-CCAAAGT
*
49844 TATAAAAGAACTCATAAAAGTTTG
193 TATAAAAGAACTCGTAAAAGTTTG
* * * *
49868 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * *
49933 GAAAGACC-AAAGTTGTTTACAAAATGAAAAAATATTTAGAA-CAAATGATGCGATTTCCCGGGC
66 CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTA-AACCAAATGATGCGATTTCCCGAGC
** *
49996 ATAAAATGTTCGGAAAATTGCTCAAAGGAATGGATC-ATCTTGAATACTTTAAGGAACCAAAGTT
130 ATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGA-CTTGAATACTTTAAGGAACCAAAGTT
* * *
50060 GTGAAAGAACTCGTAATAGTTTG
194 ATAAAAGAACTCGTAAAAGTTTG
* * * * * * *
50083 ACTAGTTCGGAAGTTAGTCCAAGAACAAAGAAAGAAACCATTCTCAAGTAAATAAATTTTTAATT
1 ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
** * * **
50148 CAAAGAAGAAAA-TTGTTTACAAAATGACAAAA-TATTTAGACCAAATTATGCGATTTCCAAAGC
66 CAAAGACCAAAACTTGTTTACAAAATGA-AAAACTATTTAAACCAAATGATGCGATTTCCCGAGC
* * * **
50211 ATTGAATGTTCGGGAAATTGCT-GAAAGGAATTGATCTTCTTGAATACTTTAAGGAACCAAAGTT
130 ATGGAATGTTCGGAAAATTGCTCG-AAGGAATGGATCGACTTGAATACTTTAAGGAACCAAAGTT
*
50275 GTGAAAA-AACTCGTAAAAGTTTG
194 AT-AAAAGAACTCGTAAAAGTTTG
* * * *
50298 ACAAGTTC-AAACATTCGTGCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAAT
1 ACAAGTTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
50362 TCAAAGACCAAAACTTG
65 TCAAAGACCAAAACTTG
50379 ATATAAGTCG
Statistics
Matches: 1333, Mismatches: 218, Indels: 65
0.82 0.13 0.04
Matches are distributed among these distances:
211 20 0.02
212 46 0.03
213 258 0.19
214 85 0.06
215 603 0.45
216 256 0.19
217 65 0.05
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
TGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGACTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAACTCGTAAAAGTTTG
Found at i:49759 original size:429 final size:432
Alignment explanation
Indices: 48600--50378 Score: 1999
Period size: 429 Copynumber: 4.1 Consensus size: 432
48590 AAGTTTGTCT
* * * * *
48600 AAGAGCCAAGAGAGAGACAATTCACATGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTA
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * *** * * *
48665 CAAATTGACAAACTATTTAAACCAAATGATGCGATTTATTGAGTATGGAA-TGTTCGGAAAATTT
66 CAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATTGTTCGGAAAATTG
* * * * * * ** * **
48729 TTCGAAGGAATGTATCGTCTTAAACACTTTACGGAA-TGAAGTTCTAAAAGTGCTCGTAAAAGTT
131 CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
48793 TGACAAATGCGGAAGTACATCCAAGAACCAAGAG-AGATACAATTCTCATGTAAATAAGTTTTTA
196 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAGA-A-AATTCTCACGTAAATAAGTTTTTA
* ** * * *
48857 ATTCAAAGACTAAAACTTGTTTACAAAATGTCAAACTATTTAAACCAAATGATGTGATTTCCTGA
259 ATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGA
* * * * * * *
48922 GCATGGTATGTTCAAAAAATTTCTCGAAGGAATCGGTCGA-CTTGAATTCTTTACGGAACCAAAG
324 GCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-GGACTATCTTGAATACTTTAAGGAACCAAAG
* * * * *
48986 TTATAAAAAAAACTTGTAAAAGTTTGACAAGTTCGGAAGTTTG-CC
388 TTATAAAAAGAACTCGTAAAAGTTTGACAAGTT-TGAAATTCGTCC
* * * * * *
49031 TAAGAAACAAGAGAGAAACAATTCTCAGGAAAATAA-ATTTTAATTCCAAGACCAAAAGTTGTTT
1 -AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * * *
49095 ACAAAATGA-AAAATATTAAGACCAAATGAGGCAATTTCCCGAGCATGAAA-TGTTAGGAAAGTA
65 ACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATTGTTCGGAAAATT
* * * * * * *
49158 GTTCGAAGGAATGGATCGTCTTGAATACGTTAAGGAACCCAAGTTATAAAGGAACTCGCAAAAAT
130 GCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
* * * * *
49223 TTTACAAGTTCGGAAGTTCGT-CAAGAACCAATAG-ATACAATTCTCACATAAATAAGTTTTTAA
195 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAGAAAATTCTCACGTAAATAAGTTTTTAA
* *
49286 TTCAAAGACCAAAACTTGTTTCCAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAG
260 TTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAG
* *
49351 CATGGAATGTTCGAAAAATTGATTGAAGGAATGGACTATCTTGAATACTTTAAGGAACCAAAGTT
325 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGACTATCTTGAATACTTTAAGGAACCAAAGTT
* * * **
49416 AT-AAAAGAACTCGTAAAACTTTGATATGTTTTGAAATTAATCC
390 ATAAAAAGAACTCGTAAAAGTTTGACAAG-TTTGAAATTCGTCC
* * *
49459 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGCTTG
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * * *
49524 CAAAATGACAAACTGTTTAGACCAAATGATGCGATTTCCCAAGCATGGAATTTTTC-GAAAATTG
66 CAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATTGTTCGGAAAATTG
* * *
49588 CTCAAAGGAAAGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTC
131 CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * *
49653 TGAGAAGTT-GGAAGTTCGTCCAAGAATCAAGAGAA-AAAATTTTCACGTAAATAAGTTTTTAAT
196 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAGAAAATTCTCACGTAAATAAGTTTTTAAT
* * * * *
49716 TCAAAGACCAAAAGTTTTTTACAAAATGAAAAACTACTTAGACCAAATGATGCAATTTCTCGAGC
261 TCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * * *
49781 ATGGAATGTTC-AAAATATTGCTCAAAGGAATGGA-TCATCTTAAATACTATAAGGAATCGAAA-
326 ATGGAATGTTCGAAAA-ATTGCTCGAAGGAATGGACT-ATCTTGAATACTTTAAGGAA-CCAAAG
*
49843 TTAT-AAAAGAACTCATAAAAGTTTGACAAGTTTGAAAGTTCGTCC
388 TTATAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAA-TTCGTCC
* * * *
49888 AAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATTGAAAGACC-AAAGTTGTTTA
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
* * * *
49952 CAAAATGAAAAAATATTTAGAACAAATGATGCGATTTCCCGGGCAT-AAAATGTTCGGAAAATTG
66 CAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATTGTTCGGAAAATTG
* * * *
50016 CTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTGTGAAAGAACTCGTAATAGTT
131 CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
50081 TGACTAGTTCGGAAGTTAGTCCAAGAACAAAGA-AAGAAACCATTCTCAAGTAAATAAATTTTTA
196 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAGAAA--ATTCTCACGTAAATAAGTTTTTA
** * **
50145 ATTCAAAGAAGAAAA-TTGTTTACAAAATGACAAAA-TATTTAGACCAAATTATGCGATTTCCAA
259 ATTCAAAGACCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTTCCCG
* ** *
50208 AGCATTGAATGTTCGGGAAATTGCT-GAAAGGAATTGATCT-TCTTGAATACTTTAAGGAACCAA
323 AGCATGGAATGTTCGAAAAATTGCTCG-AAGGAATGGA-CTATCTTGAATACTTTAAGGAACCAA
* * ** *
50271 AGTTGTGAAAA-AACTCGTAAAAGTTTGACAAGTTCAAACATTCGTGC
386 AGTTATAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAA-ATTCGTCC
*
50318 AAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAATTCAAAGACCAAAACTTG
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
50379 ATATAAGTCG
Statistics
Matches: 1134, Mismatches: 186, Indels: 55
0.82 0.14 0.04
Matches are distributed among these distances:
427 68 0.06
428 315 0.28
429 347 0.31
430 257 0.23
431 117 0.10
432 30 0.03
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (432 bp):
AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
CAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGAAATTGTTCGGAAAATTG
CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAGAAAATTCTCACGTAAATAAGTTTTTAAT
TCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGACTATCTTGAATACTTTAAGGAACCAAAGTTA
TAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAATTCGTCC
Found at i:49958 original size:644 final size:643
Alignment explanation
Indices: 48580--50374 Score: 2105
Period size: 644 Copynumber: 2.8 Consensus size: 643
48570 GCTCACATCA
* * * * * * *
48580 ACAAGTGCGAAAGTTTGTCTAAGAGCCAAGAGAGAGACAATTCACATGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATT
* * * * *** *
48645 CAAAGACTAAAACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATGCGATTTATTGAGTA
66 CAAAGAC-CAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * * * * ** *
48710 TGGAATGTTCGGAAAATT-TTTCGAAGGAATGTATCGTCTTAAACACTTTACGGAA-TGAAGTTC
130 TGGAATGTTCGGAAAATTGATT-GAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTA
** * ** * * * *
48773 TAAAAGTGCTCGTAAAAGTTTGACAAATGCGGAAGTACATCCAAGAACCAAGAGAGATACAATTC
194 TAAAAGAACTCGTAAAAGTTTGATAGTTCCGAAATTA-ATCCAAGAACCAAGAGAGAAACAATTC
* * * *
48838 TCATGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGTCAAACTATTTAAACC
258 TCAAGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* ** * * * * * *
48903 AAATGATGTGATTTCCTGAGCATGGTATGTTCAAAAAATTTCTCGAAGGAATCGG-TCGACTTGA
323 AAATGATGCGATTTCCAAAGCATGGAATGTTCAGAAAATTGCTCAAAGGAA-AGGATCGTCTTGA
* * *
48967 ATTCTTTACGGAACCAAAGTTATAAAAAAAACTTGTAAAAGTTTGACAAGTTCGGAAGTTTG-CC
387 ATACTTTAAGGAACCAAAGTTAT-AAAAAAACTTGTAAAAGTTTGACAAGTT-GGAAGTTCGTCC
* * * *
49031 TAAGAAACAAGAGAGAAACAATTCTCAGGAAAATAA-ATTTTAATTCCAAGACCAAAAGTTGTTT
450 -AAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
*
49095 ACAAAATGAAAAATATTAAGACCAAATGAGGCAATTTCCCGAGCATGAAATGTTAGGAAAGTAGT
514 ACAAAATGAAAAATATTAAGACCAAATGAGGCAATTTCCCGAGCATGAAATGTTA-GAAAGTAGC
* * * * * *
49160 TCGAAGGAATGGATCGTCTTGAATACGTTAAGGAACCCAAGTTATAAAGGAACTCGCAAAAATTT
578 TCAAAGGAATGGATCATCTTAAATACGTTAAGGAACCCAAATTATAAAAGAACTCACAAAAATTT
*
49225 T
643 G
* * * **
49226 ACAAGTTCGGAAGTTCGT-CAAGAACC-A-ATAGATACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATT
* *
49288 CAAAGACCAAAACTTGTTTCCAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCGAGCA
66 CAAAGACC-AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
*
49353 TGGAATGTTCGAAAAATTGATTGAAGGAATGGA-CTATCTTGAATACTTTAAGGAACCAAAGTTA
130 TGGAATGTTCGGAAAATTGATTGAAGGAATGGATC-ATCTTGAATACTTTAAGGAACCAAAGTTA
* **
49417 TAAAAGAACTCGTAAAACTTTGATATGTTTTGAAATTAATCCAAGAACCAAGAGAGAAACAATTC
194 TAAAAGAACTCGTAAAAGTTTGATA-GTTCCGAAATTAATCCAAGAACCAAGAGAGAAACAATTC
* * * *
49482 TCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGCTTGCAAAATGACAAACTGTTTAGACC
258 TCAAGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACC
* *
49547 AAATGATGCGATTTCCCAAGCATGGAATTTTTC-GAAAATTGCTCAAAGGAAAGGATCGTCTTGA
323 AAATGATGCGATTTCCAAAGCATGGAA-TGTTCAGAAAATTGCTCAAAGGAAAGGATCGTCTTGA
* * *
49611 ATACTTTAAGGAACCAAAGTTATAAAAGAACTTGTAAAAGTCTGAGAAGTTGGAAGTTCGTCCAA
387 ATACTTTAAGGAACCAAAGTTATAAAAAAACTTGTAAAAGTTTGACAAGTTGGAAGTTCGTCCAA
* * *
49676 GAATCAAGAGA-AAA-AATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACA
452 GAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
49739 AAATGAAAAACTACTT-AGACCAAATGATGCAATTTCTCGAGCATGGAATGTTCA-AAA-TATTG
517 AAATGAAAAA-TA-TTAAGACCAAATGAGGCAATTTCCCGAGCATGAAATGTT-AGAAAGTA--G
* * * *
49801 CTCAAAGGAATGGATCATCTTAAATAC-TATAAGGAATCGAAATTATAAAAGAACTCATAAAAGT
577 CTCAAAGGAATGGATCATCTTAAATACGT-TAAGGAACCCAAATTATAAAAGAACTCACAAAAAT
49865 TTG
641 TTG
*
49868 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATT
* * * * *
49933 GAAAGACCAAAGTTGTTTACAAAATGAAAAAATATTTAGAACAAATGATGCGATTTCCCGGGCAT
66 CAAAGACCAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
** * ** * *
49998 AAAATGTTCGGAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTGTG
131 GGAATGTTCGGAAAATTGATTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATA
* * * * * * *
50063 AAAGAACTCGTAATAGTTTGACTAGTTCGGAAGTTAGTCCAAGAACAAAGAAAGAAACCATTCTC
196 AAAGAACTCGTAAAAGTTTGA-TAGTTCCGAAATTAATCCAAGAACCAAGAGAGAAACAATTCTC
* *
50128 AAGTAAATAAATTTTTAATTCAAAGA-AGAAAA-TTGTTTACAAAATGACAAAATATTTAGACCA
260 AAGTAAATAAGTTTTTAATTCAAAGACA-AAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * ** *
50191 AATTATGCGATTTCCAAAGCATTGAATGTTCGGGAAATTGCTGAAAGGAATTGATCTTCTTGAAT
324 AATGATGCGATTTCCAAAGCATGGAATGTTCAGAAAATTGCTCAAAGGAAAGGATCGTCTTGAAT
* * * ** * *
50256 ACTTTAAGGAACCAAAGTTGTGAAAAAACTCGTAAAAGTTTGACAAGTTCAAACATTCGTGCAAG
389 ACTTTAAGGAACCAAAGTTATAAAAAAACTTGTAAAAGTTTGACAAGTTGGAA-GTTCGTCCAAG
* *
50321 AACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAATTCAAAGACCAAAA
453 AAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
50375 CTTGATATAA
Statistics
Matches: 980, Mismatches: 144, Indels: 50
0.83 0.12 0.04
Matches are distributed among these distances:
640 16 0.02
641 45 0.05
642 130 0.13
643 291 0.30
644 386 0.39
645 60 0.06
646 52 0.05
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (643 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAATT
CAAAGACCAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
GGAATGTTCGGAAAATTGATTGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATA
AAAGAACTCGTAAAAGTTTGATAGTTCCGAAATTAATCCAAGAACCAAGAGAGAAACAATTCTCA
AGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATGCGATTTCCAAAGCATGGAATGTTCAGAAAATTGCTCAAAGGAAAGGATCGTCTTGAATAC
TTTAAGGAACCAAAGTTATAAAAAAACTTGTAAAAGTTTGACAAGTTGGAAGTTCGTCCAAGAAA
CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
GAAAAATATTAAGACCAAATGAGGCAATTTCCCGAGCATGAAATGTTAGAAAGTAGCTCAAAGGA
ATGGATCATCTTAAATACGTTAAGGAACCCAAATTATAAAAGAACTCACAAAAATTTG
Found at i:52307 original size:215 final size:214
Alignment explanation
Indices: 51780--54952 Score: 2216
Period size: 215 Copynumber: 14.9 Consensus size: 214
51770 GTATAAAAAC
* * * * *
51780 TTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGCAATTTACCGAGCATGGAATGTTCGAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * * ** *** * *
51845 AAGTTACTCAAAGAAATATATTGCCTTGAGTACTTTAAGGAACCGAAGTTGTGAAAGAACTCGTA
66 AATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGTA
* ** * * * *
51910 AAAGTTTAACAAGTTTGGAAGTTCGTGTAAGAACCAAGAGAGAAACAAATTCTCACGTAATTAAG
130 AAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAA-TAATTCTCATGTAAGTAAG
* * * *
51975 TTTTTAATTCAAAGACCGAAAC
194 TTTTTAATTGAAACAAC-AAAG
* * * * *
51997 TTGTTTACAAAATGACAAACTATTTAAACCAAATTATGCGATTTCTCAAGTATGGAATGTTCAGA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-A
* * *
52062 ATATTGTTC-GAAA-GAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAGGAACTCG
65 AAATT-TTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAA-GAACTCG
* * *
52125 TAAAAGTTTTACTAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAA
128 TAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAA
52190 GTTTTTAATTGAAACAACAAAG
193 GTTTTTAATTGAAACAACAAAG
* * * * *
52212 TTGTTTAGAAAATCACAAAATATTTAAACCAAATGATGCGATTTCCCGAGCATTGAATGTTCAAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
** * * *
52277 AATTTTCTCAAAGGAATGGATCGCCTTGAATAATTTAAGGAACCGAAGTTATGAAAAAACTCATA
66 AATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGTA
* * * * *
52342 AAAGTTTGACGAGTTTGGAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCATGTAAGTAAGT
130 AAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAAGT
* * ** *
52407 TTTTAATTCAAAGATTGAAAC
195 TTTTAATTGAAACA-ACAAAG
* * * * *
52428 TTGTTTACATAATGACAAACTATTTAGACCAAATAATGCGATTTTCTGAGTATGGAATGTTCAAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * * * *
52493 ATATTGTTC-GAAA-GAATGAATCATCTTGAATACCTTAAGGAACAGAAGTTCTAGAAGAACTCG
66 A-ATT-TTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA-AAGAACTCG
* * * *
52556 TAAATGTTTGACAAGTTTGAAAGTTCGTCTAAGGACCAAGAGTGAAATAATTCTCATGTAAGTAA
128 TAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAA
52621 GTTTTTAATTGAAACAACAAAG
193 GTTTTTAATTGAAACAACAAAG
* *
52643 TTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGGGCAT-GAATGTTCAA
1 TTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAA
* * * * *
52707 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTCAT
65 AAATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAA-GAACTCGT
* * * * * **
52772 AAAAGTTTTACTAGTTCGTAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATTTAAACAAG
129 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAAG
52837 TTTTTAATTGAAACAACAAAAG
194 TTTTTAATTGAAACAAC-AAAG
* * *
52859 TTGTTTACAAAATGACGAACTACTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGTA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC--A
* * ** *** * ** * * * * *
52924 AAATTTTTCTCTTTAAGGAACCGAAGTTATAAAATAAC--T-CGTAA---AAGTT-T-GACAAGT
64 AAAATTTTCTC--AAAGGAATGGATCATCTTGAAT-ACTTTAAGGAACCGAAGTTATAAAGAACT
* * * * **** ** ** ** * * *
52981 -TTAGAAGTTCGTCCAAG-AACCAAGAGCGAAACAA-ATTTC-A-CGT-AAATAAGTTTTTAAT-
126 CGTAAAAGTTTG-ACAAGTTTGGAAGTTCG-TCCAAGA-ACCAAGAGTGAAATAA--TTCTCATG
* * *
53039 TCAAAGACCAAAGTTGTTTACAAAATGAAA-AA-ATA-
186 T--AAG---TAAGTT-TTT---AATTGAAACAACAAAG
** * * * ** * * * *
53074 TT-TAGACCAAATGATGAAA-T-TTCCCGAGCATGAAATG-TTCGAAAAATTGCTCGAAAGTATG
1 TTGTTTACAAAATGA-CAAACTATT---TAG-ACCAAATGATGCG----ATTTCCCG--AGCATG
*** * ** * *
53135 G-ATCG-TCTTGAATACTT-T--AAGGAACCGA--A-GTT--ATA----AAGGAA---ATCG-TA
55 GAAT-GTTCAAAAAT-TTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGA-AGTTA
** * ** * *
53182 -AAAG---TTTTAATAGTTTGA-AAGTTCGTCCAAG--A--------ACCAAGAGAGAAATAATT
117 TAAAGAACTCGTAAAAGTTTGACAAGTT--TGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATT
* * * * *
53232 CTCACGTAATTAAGTTTTTAATTCAAA-GACAAAC
180 CTCATGTAAGTAAGTTTTTAATTGAAACAACAAAG
* * *
53266 TTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATTTTTGAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTCAA
* * ** * *
53331 AAA-TTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCAT
65 AAATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGT
* * * *
53395 AAAAGTTTGAGAAG-TTGGAAGTTCGTCCAAGAACCAAGA--GAAAAAATTCCCATGTAAATAAG
129 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAAG
* * *
53457 TTTTTAATTAAAAGACCAAAAG
194 TTTTTAATTGAAACAAC-AAAG
* * * * * * * * **
53479 TTTTTTATAAAATGACAAACAATTTAGACCAAATTATGCGATTTCTCAAGCTTAGAATGCCCGAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
** * * * * *
53544 AAA-TAGCTCAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCAAAGTTGTAAAAGAACTCTT
65 AAATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGT
** * * * *
53608 AAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAAGTATA-TAA
129 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTA-AGTAA
* * * *
53672 GTTTTTAATTTATAGATCAAAAG
193 GTTTTTAATTGAAACAAC-AAAG
** ** * **
53695 TT-TATTACAAAATGACAAACTATTTAGACCAAATGATATGATTTTTCGAGCATTGAATGTTTGG
1 TTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCA
* * * *
53759 AAAA-TTACTCAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTGTGAAAGAACTCG
64 AAAATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCG
* * * * * * * * *
53823 TAAATGTTT-ATCAAGTTCGGACA-TTCATGCAAGAACCAAGAGAGAAACAATTATCACGTAATT
128 TAAAAGTTTGA-CAAGTTTGGA-AGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGT
* * *
53886 AAGTTTTTAATTCAAAGAACACAAC
191 AAGTTTTTAATTGAAACAACA-AAG
* *
53911 TTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGTATGGAATGTTC-AA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * * *
53975 AATATTGCTCGAAA-GAAAGGATCATCTTGTATACTTTAAGGAACCGAAGTTATAAAAGAACTCA
66 AAT-TTTCTC-AAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCG
* * * * * *
54039 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAA-AGAGAAACAATACTCACGTAAATAA
128 TAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAA
* * *
54102 GTTTTTAATTCAAAGACCAAAG
193 GTTTTTAATTGAAACAACAAAG
* * * * * *
54124 TTGTTTACAAAATGAAAAAATATTTAAACCAAGTGATGCGATTTTCCGAGCGTGGAATGTTCGAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
* * * * * * * *
54189 AAA-TTGCTCGAAGAAATGGATCGTCTTGAATGCTTTAAGGAATCAAAGTTATAAAGGAACTTGT
65 AAATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAA-GAACTCGT
* * * ** * * * * * *
54253 AAATGTTTTACTAGTTCAGAAGTTCATCCAAGAACCAAGAGTGAAACAATTTTCACGTAAATAAA
129 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAAG
* * *
54318 TTTTTAATTCAAAGACCAAAG
194 TTTTTAATTGAAACAACAAAG
* * * *
54339 TTATTTACAAAATGACAAAATATTTAGACCAAATAATGCGATTTCCCTAGCATGGAATGTTCGAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
* * *
54404 AAA-TTGCTCAAAGGAATGG---ATCTT--CTACTTTAAGGAACCGAAGTTGTGAAAGAACTCGT
65 AAATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGT
* * * * * * *
54463 AAAAGTTTGACAAGTTCGAAAGCTCGTGCAAGAACCAAGAGAGAAACAATTCTCATGTAA-TAGG
129 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAAG
* * * *
54527 TTTTTAATTCAAAGACCAAAAC
194 TTTTTAATTGAAACAAC-AAAG
* * * * ** *
54549 TTGTTTACAAAATGACAAACTATTTAAACTAAATTATGCGGTTTCTTGAGTATGGAATGTTCAAA
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * * * *
54614 ATATTGTTC-GAAA-GAATGGAACATCTTCAATACTTTAAGGAACCAAAGTTATAAAGGAATTCG
66 A-ATT-TTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAA-GAACTCG
* * * * *
54677 TAAAAGTTTTACTAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAATAACTCTCATGTAAATAA
128 TAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAA
*
54742 GTTTTTAATTGAAACGACAAAG
193 GTTTTTAATTGAAACAACAAAG
* * * *
54764 TTGTTTACAAAATGACAAAATATTTAGACCAAATTATGCGATTTCCCGAGTATGGAATGTTC-AG
1 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* ** * * * * **
54828 AATATTGCTCAAAATAATAGATCATCTTGAATACTTTAAGGAACCAAAGTTCTAAAAGGACAAGT
66 AAT-TTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-AAAGAACTCGT
* * * * *
54893 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCATGTAA
129 AAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAA
54953 ACAACTTCAA
Statistics
Matches: 2364, Mismatches: 450, Indels: 286
0.76 0.15 0.09
Matches are distributed among these distances:
185 7 0.00
186 2 0.00
187 10 0.00
188 8 0.00
190 13 0.01
191 9 0.00
192 5 0.00
193 15 0.01
194 7 0.00
197 9 0.00
198 5 0.00
199 3 0.00
200 9 0.00
202 4 0.00
203 4 0.00
205 15 0.01
206 4 0.00
207 8 0.00
208 10 0.00
209 32 0.01
210 141 0.06
211 57 0.02
212 26 0.01
213 274 0.12
214 103 0.04
215 732 0.31
216 632 0.27
217 150 0.06
218 24 0.01
219 13 0.01
220 20 0.01
221 6 0.00
222 7 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (214 bp):
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
AATTTTCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAGAACTCGTAA
AAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATGTAAGTAAGTT
TTTAATTGAAACAACAAAG
Found at i:52584 original size:431 final size:425
Alignment explanation
Indices: 51780--54952 Score: 3367
Period size: 431 Copynumber: 7.4 Consensus size: 425
51770 GTATAAAAAC
* * *
51780 TTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGCAATTTACCGAGCATGGAATGTTCGAA
1 TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
* * * ** * * * * * *
51845 AAGTTACTCAAAGAAATATATTGCCTTGAGTACTTTAAGGAACCGAAGTTGTGAAAGAACTCGTA
65 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAAACTCATA
* * ** *
51910 AAAGTTTAACAAGTTTGGAAGTTCGTGTAAGAACCAAGAGAGAAACAAATTCTCACGTAATTAAG
129 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATTCTCATGTAA-TAAG
* * *
51975 TTTTTAATTCAAAGACCGAAACTTGTTTACAAAATGACAAACTATTTAAACCAAATTATGCGA-T
192 TTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * *
52039 TTCTCAAGTATGGAATGTTCAGAATATTGTTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA
256 TTCT-GAGCATGGAATGTTCA-AAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA
* * * * *
52104 CTGAAGTTATAAAGGAACTCGTAAAAGTTTTACTAGTTCGGAAGTTCGTCCAAGAACCAAGAGTG
319 CAGAAGTTATAAA-GAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGTG
* * *
52169 AAATAATTCTCATGTAAGTAAGTTTTTAATTGAAACAACAAAG
383 AAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAG
* * * *
52212 TTGTTTAGAAAATCACAAAATATTTAAACCAAATGATGCGATTTCCCGAGCATTGAATGTTCAAA
1 TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * *
52277 AATTTTCTCAAAGGAATGGATCGCCTTGAATAATTTAAGGAACCGAAGTTATGAAAAAACTCATA
66 AA-TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAAACTCATA
* * * *
52342 AAAGTTTGACGAGTTTGGAAGTTTGTGCAAGAACCAAGAGAGAAACAATTCTCATGTAAGTAAGT
129 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAA-TAAGT
** * *
52407 TTTTAATTCAAAGATTGAAACTTGTTTACATAATGACAAACTATTTAGACCAAATAATGCGATTT
193 TTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
52472 TCTGAGTATGGAATGTTCAAAATATTGTTCGAAAGAATGAATCATCTTGAATACCTTAAGGAACA
257 TCTGAGCATGGAATGTTCAAAA-ATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACA
* * * *
52537 GAAGTTCTAGAAGAACTCGTAAATGTTTGACAAGTTTGAAAGTTCGTCTAAGGACCAAGAGTGAA
321 GAAGTTATA-AAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGTGAA
* * *
52602 ATAATTCTCATGTAAGTAAGTTTTTAATTGAAACAACAAAG
385 ATAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAG
* * *
52643 TTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGGGCAT-GAATGTTCAA
1 TTGTTTAC-AAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-A
* * * *
52707 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTCAT
64 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AAACTCAT
* * * * * * *
52772 AAAAGTTTTACTAGTTCGTAAGTTCGTCCAAGAACCAAGAGTGAAATAATTCTCATTTAAACAAG
128 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGT-AATAAG
* * * * *
52837 TTTTTAATTGAAACAACAAAAGTTGTTTACAAAATGACGAACTACTTAGACCAAATGATGCGATT
192 TTTTTAATTCAAA-GACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* ** * *
52902 TCCCAAGCATGGAATGTTC-------G-T---AA-AAT---T--T-TT--CT-CTTTAAGGAACC
256 TTCTGAGCATGGAATGTTCAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACA
* *
52946 GAAGTTATAAAATAACTCGTAAAAGTTTGACAAGTTT-AGAAGTTCGTCCAAGAACCAAGAGCGA
321 GAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTTGA-AAGTTCGTCCAAGAACCAAGAGTGA
* * *
53010 AACAAATT-TCACGTAAATAAGTTTTTAATTCAAAGACCAAAG
384 AA-TAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAG
* ** *
53052 TTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGAAATTTCCCGAGCATGAAATGTTCGAA
1 TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
* *
53117 AAATTGCTCGAAA-GTATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAAA-TCG
65 AAATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA--AAACTCA
* * * * *
53180 TAAAAGTTTTA-ATAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAATTA
127 TAAAAGTTTGACA-AGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAA-TA
*
53244 AGTTTTTAATTCAAAGAC-AAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGAT
190 AGTTTTTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * **
53308 TTCCCGAGCATGGAATTTTTGAAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAA
255 TTTCTGAGCATGGAA-TGTTCAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA
* * *
53373 TC-GAAGTTATAAAAGAACTCATAAAAGTTTGAGAAG-TTGGAAGTTCGTCCAAGAACCAAGA--
319 -CAGAAGTTAT-AAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGT
* * * *
53434 GAAAAAATTCCCATGTAAATAAGTTTTTAATTAAAAGACCAAAAG
382 GAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGAAC-AAAG
* * * * * * * **
53479 TTTTTTATAAAATGACAAACA-ATTTAGACCAAATTATGCGATTTCTCAAGCTTAGAATGCCCGA
1 TTGTTTACAAAATGACAAA-ATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-A
* * * * *
53543 AAAATAGCTCAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCAAAGTTGTAAAAGAACTCTT
64 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCAT
* * *
53608 AAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAAGTATATAAG
128 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTA-ATAAG
* * * **
53673 TTTTTAATTTATAGATCAAAAGTT-TATTACAAAATGACAAACTATTTAGACCAAATGATATGAT
192 TTTTTAATTCAAAGA-CAAAACTTGT-TTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* ** * * *
53737 TTT-TCGAGCATTGAATGTTTGGAAAATTACTC-AAAGGAATGGATCGTCTTGAATAATTTAAGG
255 TTTCT-GAGCATGGAATG-TTCAAAAATTGCTCGAAA-GAATGGATCATCTTGAATACTTTAAGG
* * * * * * *
53800 AACCGAAGTTGTGAAAGAACTCGTAAATGTTT-ATCAAGTTCGGACA-TTCATGCAAGAACCAAG
317 AACAGAAGTTAT-AAAGAACTCGTAAAAGTTTGA-CAAGTT-TGAAAGTTCGTCCAAGAACCAAG
* * * * * *
53863 AGAGAAACAATTATCACGTAATTAAGTTTTTAATTCAAAGAACACAAC
379 AGTGAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACA-AAG
* * *
53911 TTGTTTACAAAATGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGTATGGAATGTTCAAA
1 TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
* * *
53976 ATATTGCTCGAAA-GAAAGGATCATCTTGTATACTTTAAGGAACCGAAGTTATAAAAGAACTCAT
66 A-ATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCAT
* *
54040 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAA-AGAGAAACAATACTCACGTAAATAAG
128 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGT-AATAAG
* * * * * *
54103 TTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGAAAAAATATTTAAACCAAGTGATGCGATTT
192 TTTTTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
54168 TCCGAGCGTGGAATGTTCGAAAAATTGCTCG-AAGAAATGGATCGTCTTGAATGCTTTAAGGAAT
257 TCTGAGCATGGAATGTTC-AAAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTAAGGAA-
* * * * * *
54232 CA-AAGTTATAAAGGAACTTGTAAATGTTTTACTAG-TTCAGAAGTTCATCCAAGAACCAAGAGT
319 CAGAAGTTATAAA-GAACTCGTAAAAGTTTGACAAGTTTGA-AAGTTCGTCCAAGAACCAAGAGT
* * * * *
54295 GAAACAATTTTCACGTAAATAAATTTTTAATTCAAAGACCAAAG
382 GAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAG
* * *
54339 TTATTTACAAAATGACAAAATATTTAGACCAAATAATGCGATTTCCCTAGCATGGAATGTTCGAA
1 TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AA
* * * *
54404 AAATTGCTCAAAGGAATGGA---TCTT--CTACTTTAAGGAACCGAAGTTGTGAAAGAACTCGTA
65 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAAACTCATA
* * * *
54464 AAAGTTTGACAAGTTCGAAAGCTCGTGCAAGAACCAAGAGAGAAACAATTCTCATGTAATAGGTT
129 AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAATAAGTT
* * * *
54529 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAAACTAAATTATGCG-GTTT
194 TTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT
* * * *
54593 CTTGAGTATGGAATGTTCAAAATATTGTTCGAAAGAATGGAACATCTTCAATACTTTAAGGAACC
258 C-TGAGCATGGAATGTTCAAAA-ATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAA-C
* * * * *
54658 A-AAGTTATAAAGGAATTCGTAAAAGTTTTACTAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGA
320 AGAAGTTATAAA-GAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGTGA
* *
54722 AATAACTCTCATGTAAATAAGTTTTTAATTGAAACG-ACAAAG
384 AATAATTCTCATGTAAATAAGTTTTTAATTCAAA-GAACAAAG
* *
54764 TTGTTTACAAAATGACAAAATATTTAGACCAAATTATGCGATTTCCCGAGTATGGAATGTTCAGA
1 TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-A
* ** * * * * * *
54829 ATATTGCTCAAAATAATAGATCATCTTGAATACTTTAAGGAACCAAAGTTCTAAAAGGAC-AAGT
65 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCA-T
* *
54893 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCATGTAA
128 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAA
54953 ACAACTTCAA
Statistics
Matches: 2336, Mismatches: 310, Indels: 192
0.82 0.11 0.07
Matches are distributed among these distances:
407 56 0.02
408 48 0.02
409 229 0.10
410 11 0.00
412 2 0.00
413 1 0.00
415 2 0.00
416 1 0.00
418 3 0.00
419 3 0.00
420 3 0.00
422 1 0.00
423 60 0.03
424 35 0.01
425 275 0.12
426 43 0.02
427 174 0.07
428 118 0.05
429 333 0.14
430 139 0.06
431 424 0.18
432 372 0.16
433 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (425 bp):
TTGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAA
AATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAACTCATAAA
AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAATAAGTTTT
TAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCTG
AGCATGGAATGTTCAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTAAGGAACAGAAGT
TATAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGTGAAATAATT
CTCATGTAAATAAGTTTTTAATTCAAAGAACAAAG
Found at i:53772 original size:216 final size:215
Alignment explanation
Indices: 52934--54953 Score: 2387
Period size: 215 Copynumber: 9.4 Consensus size: 215
52924 AAATTTTTCT
* **
52934 CTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* *
52999 ACCAAGAGCGAAACAAATT-TCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAA
66 ACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAGTTGTTTACAAA
* * ** *
53063 ATGAAAAAATATTTAGACCAAATGATGAAATTTCCCGAGCATGAAATGTTCGAAAAATTGCTCGA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-A
*
53128 AA-GTATGGATCGTCTTGAATA
194 AAGGAATGGATCGTCTTGAATA
* * * * *
53149 CTTTAAGGAACCGAAGTTATAAAGGAAATCGTAAAAGTTTTA-ATAGTTTGAAAGTTCGTCCAAG
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCGGAAGTTCGTCCAAG
* * * *
53213 AACCAAGAGAGAAATAATTCTCACGTAATTAAGTTTTTAATTCAAAGAC-AAACTTGTTTGCAAA
65 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAGTTGTTTACAAA
* * *
53277 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATTTTTGAAAAATTGCTCGA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
*
53342 AGGAATGGATTGTCTTGAATA
195 AGGAATGGATCGTCTTGAATA
* * *
53363 CTTTAAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTGAGAAGTT-GGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * *
53427 ACCAAGAGA-AAA-AATTCCCATGTAAATAAGTTTTTAATTAAAAGACCAAAAGTTTTTTATAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAA
* * * * * * ** *
53490 ATGACAAACAATTTAGACCAAATTATGCGATTTCTCAAGCTTAGAATGCCCGAAAAATAGCTCAA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
53555 AGGAATGGATCGTCTTGAATA
195 AGGAATGGATCGTCTTGAATA
* * * * * *
53576 ATTTAAGGAACCAAAGTTGTAAAAGAACTCTTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * *
53641 ACCAAGAGAGAAACAATTCTCAAGTATATAAGTTTTTAATTTATAGATCAAAAGTT-TATTACAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGT-TTACAA
** ** * * * *
53705 AATGACAAACTATTTAGACCAAATGATATGATTTTTCGAGCATTGAATGTTTGGAAAATTACTCA
129 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCA
53770 AAGGAATGGATCGTCTTGAATA
194 AAGGAATGGATCGTCTTGAATA
* * * * * *
53792 ATTTAAGGAACCGAAGTTGTGAAAGAACTCGTAAATGTTT-ATCAAGTTCGGACA-TTCATGCAA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGA-AGTTCGTCCAA
* * * *
53855 GAACCAAGAGAGAAACAATTATCACGTAATTAAGTTTTTAATTCAAAGAACACAACTTGTTTACA
64 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACAAAAGTTGTTTACA
* *
53920 AAATGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGTATGGAATGTTC-AAAATATTGCT
128 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA-ATTGCT
* * *
53984 CGAAA-GAAAGGATCATCTTGTATA
192 C-AAAGGAATGGATCGTCTTGAATA
*
54008 CTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* *
54073 A-CAA-AGAGAAACAATACTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAGTTGTTTACAAAA
* * * * * * *
54136 TGAAAAAATATTTAAACCAAGTGATGCGATTTTCCGAGCGTGGAATGTTCGAAAAATTGCTCGAA
131 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAA
* *
54201 GAAATGGATCGTCTTGAATG
196 GGAATGGATCGTCTTGAATA
* * * * * * * * *
54221 CTTTAAGGAATCAAAGTTATAAAGGAACTTGTAAATGTTTTACTAGTTCAGAAGTTCATCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * *
54286 ACCAAGAGTGAAACAATTTTCACGTAAATAAATTTTTAATTCAAAGACCAAAGTTATTTACAAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAGTTGTTTACAAAA
* * *
54351 TGACAAAATATTTAGACCAAATAATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCAAA
131 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAA
*
54416 GGAATGGA---TCTT--CTA
196 GGAATGGATCGTCTTGAATA
* * * * *
54431 CTTTAAGGAACCGAAGTTGTGAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGCTCGTGCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * *
54496 ACCAAGAGAGAAACAATTCTCATGT-AATAGGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAA
* * * * ** * *
54560 ATGACAAACTATTTAAACTAAATTATGCGGTTTCTTGAGTATGGAATGTTC-AAAATATTGTTCG
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA-ATTGCTC-
* * *
54624 AAA-GAATGGAACATCTTCAATA
193 AAAGGAATGGATCGTCTTGAATA
* * * * *
54646 CTTTAAGGAACCAAAGTTATAAAGGAATTCGTAAAAGTTTTACTAGTTCGGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * *
54711 ACCAAGAGTGAAATAACTCTCATGTAAATAAGTTTTTAATTGAAACGAC-AAAGTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACAAAAGTTGTTTACAAA
* * * *
54775 ATGACAAAATATTTAGACCAAATTATGCGATTTCCCGAGTATGGAATGTTC-AGAATATTGCTCA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCA
** * *
54839 AAATAATAGATCATCTTGAATA
194 AAGGAATGGATCGTCTTGAATA
* * * ** * *
54861 CTTTAAGGAACCAAAGTTCTAAAAGGACAAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAAA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
*
54926 ACCAAGAGAGAAACAATTCTCATGTAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAA
54954 CAACTTCAAG
Statistics
Matches: 1540, Mismatches: 231, Indels: 68
0.84 0.13 0.04
Matches are distributed among these distances:
209 23 0.01
210 143 0.09
211 32 0.02
212 10 0.01
213 291 0.19
214 202 0.13
215 468 0.30
216 362 0.24
217 9 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAGTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAA
GGAATGGATCGTCTTGAATA
Found at i:55329 original size:16 final size:16
Alignment explanation
Indices: 55273--55370 Score: 62
Period size: 15 Copynumber: 6.1 Consensus size: 16
55263 AGAGAAATGA
55273 GAAAGAAAAAGAAAGT
1 GAAAGAAAAAGAAAGT
**
55289 GTGAG-AAAAGAAACTGT
1 GAAAGAAAAAGAAA--GT
* *
55306 GAATGAAAAAGAAAAT
1 GAAAGAAAAAGAAAGT
55322 GAAAG-AAAAG-AAGTT
1 GAAAGAAAAAGAAAG-T
*
55337 GAAACAAAAAGAGAGAGT
1 GAAAGAAAAAGA-A-AGT
*
55355 G-AGGAAAAA-AAAGT
1 GAAAGAAAAAGAAAGT
55369 GA
1 GA
55371 GAGTGATGAA
Statistics
Matches: 62, Mismatches: 11, Indels: 19
0.67 0.12 0.21
Matches are distributed among these distances:
14 6 0.10
15 19 0.31
16 14 0.23
17 10 0.16
18 11 0.18
19 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.27, T:0.10
Consensus pattern (16 bp):
GAAAGAAAAAGAAAGT
Found at i:55367 original size:20 final size:21
Alignment explanation
Indices: 55337--55381 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
55327 AAAAGAAGTT
55337 GAAACAAAAAGAGAGAGTGAG
1 GAAACAAAAAGAGAGAGTGAG
* *
55358 GAAA-AAAAAGTGAGAGTGAT
1 GAAACAAAAAGAGAGAGTGAG
55378 GAAA
1 GAAA
55382 GTGTGAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.58, C:0.02, G:0.31, T:0.09
Consensus pattern (21 bp):
GAAACAAAAAGAGAGAGTGAG
Found at i:65360 original size:13 final size:13
Alignment explanation
Indices: 65344--65368 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65334 TCAGCTAATC
65344 AAATAAAATAAAA
1 AAATAAAATAAAA
65357 AAATAAAATAAA
1 AAATAAAATAAA
65369 TTTAAGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAAATAAAA
Found at i:69195 original size:431 final size:432
Alignment explanation
Indices: 68378--73003 Score: 4658
Period size: 431 Copynumber: 10.9 Consensus size: 432
68368 TCTCTAGTGA
* * * *
68378 TTCTTGGACGAACTTTCGAACTAGTAAAACTTTTACGAATTCTTTTCTAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * *
68443 GCATTCAAGACGATCCTTTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGTAAATCGC-CCT
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATC-
* * * * ** *
68507 AGTTT-TTCTAAAAAGTTTGTCATTTTGTGTAACAGGTTTTACTCTTTCAATTAAAAACTTATTT
130 A-TTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * *
68571 ACATGAGAATTGTTTCTATCTTGGTTATTGGACGAACTTCCAAACATATCAAACTGTTAGGAGGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA-GT
* * * *
68636 T-TTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGGTCCATCCCTTCGAGCAATTTTTCGAAC
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCTAGAAC
* *
68700 ATTCCATGCTCGGGAAATCGCATCATTTTGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
322 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
**
68765 TCTTTGAATTAAAAACTTATTTACGTTTGAATTATTTCTCTCTTGG
387 TCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* * ** * * *
68811 TTCTTGGAAGAACTTCCGAACTAGTAAAACTTTTACGAGTTCAATTATAACTTTGGTTCATTGAA
1 TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * *
68876 GTATTCAAGACGATTCATTCCTTTGAGCAATTTTCCGAACATTTCATGCTCGGGAAATCGCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCA
* *
68941 TTTGGTCAAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* *
69006 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAACTTTTAAGAGTTCTT
196 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * * * *
69071 TTA-AACTTCGATTCCTTAAAGTATTCAAGGTGGTACATTCCTTCGAACAATTTCTAGAACATTC
261 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCTAGAACATTC
* * * * * * *
69135 CATGCACGGGAAATTGCATCTTTTTGACTAAATAGTTTTTCATTTTCTAAACAAGTTTTGGTCTT
326 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * *
69200 TGAACTAAAAACTTTTTTACATGAGAATTA-TT-TCTATTAG
391 TGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* **
69240 TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAAA
1 TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * ** * **
69305 GCATTCAAGACGATCCTTTCTTTCGAGCAATTTTTCGAACCCTCTATGCTTAGGAAATCGCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCA
** * * * * * *
69370 TTTTTTCTAAA-ACTTTGTCATTTTGTAAACAAGTTTCGCTCTTTCAATTAAAAGCTTATTTAAG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* *
69434 TGAGAATCGTTTCTCTCTTGGTTCTTGGACGAACGTT-CAAACATGTCAAACTTTTACGAGTTCT
196 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCT
** * * * * * *
69498 TTTATAACTTCAATTCCATAAAGTATTCAAGACGGTCCATTCTTTCGAGCAATTTTTCGAACATT
260 TTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCTAGAACATT
* * * *
69563 CCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTGTCATTTTTTAAACAAGTTTTTGTCT
325 CCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * *
69628 TTGAATTAAAAACTTATTTACTTGAGAA--CTGTATCTATTGG
390 TTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* ** * * *
69669 TTCTTGGACAAACTTCCGAACTTTTAAAACTTCTACGAGTTCCTTTATAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * **
69734 GTATTCAATG-CGATCCATTCCTTCAAGCAATTTTTCGAGCATTCCATGCTTTGGAAATCGCATC
66 GTATTCAA-GACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATC
* * * * * * *
69798 ATTTGGCCTAAGTAGTTTGTCATTTTGTAAACAACTTCTGTTGTTTGAATTAAAAACTTATTTAT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * * *
69863 GTGAGAATTATTTCTCTCTTGTTTCTTGGACGAACATT-CGAACTAGTAAAACTTTTACAATTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTC
* ** * * * * *
69927 TTTTAAAACTTTTGTTCCTTAAAGTATTTAAGATGATCCATTCTTTCAAGCAATTTTTTGAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCTAGAACAT
* * * *
69992 TCCATGCTCGAGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTGGTC
324 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
*
70056 TTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTTG
389 TTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* * * * * *
70100 TTTTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTAGAACTTCGATTCCTTAAA
1 TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
** * * ** * *
70165 GTATTTGAGACGATCCATTCCTTCGAGAAATTTTCAGAACATTCCATGCTAAGTAAATCGCATCG
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCA
* * * *
70230 TTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTAAATT-AAAACTTATTTACC
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * **** *
70294 AGAGACTTGTTTCTCTTTTGGTTTTTGGACGAACTTTTGCACTTGTCAAACTTTTACAAGTTCTT
196 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * * *
70359 TTATAACTTCAGTTCCTTATAGTATTCAAGATGATCCATTCCTTAGAGAAATTT-TACGAACATT
261 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCTA-GAACATT
** * * *
70423 CCATGCTCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTT
325 CCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * *
70488 TTAAATTATAAACTTATTTATGTGAGAATTA-TT-TCTCTTAG
390 TTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* * * *
70529 TTCTTGGATGAACTTCTGACACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAA
1 TTCTTGGACGAACTTCCGA-ACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * *
70594 AGTATTCAAGATGATCATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCGAGAAATCGC
65 AGTATTCAAGACG---ATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGC
* * *
70659 ATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAATTAAAAAACTTAA
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTAT
* * * * * * *
70724 TTACGTAAGAATTGTTTTTCTCTTGGTTCTTGCACGAACTTCTAAACTTGTCAAGCTTTTATGAC
191 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
* * * * * *
70789 TTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAATTTTCCA-A
256 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTCTAGA
* * * * **
70853 ACATTCCATGCTTGGGAAATCTCATCATTTGGTCTAAATATTTTTTTCATTTCCTAAACAAGTTT
320 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTT
* * * *
70918 TGGTCTTTCAATTAAAAACTTAATTACGTGAGAATTGTTTCTATCTTGG
384 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* ** ** * * * * * *
70967 TTCTTGCATAAACTTTTGAATTTGTCAAACTTTGATGAGTTCTTTCACAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * ** *
71032 GTATACAAGACGATCCATTTCTTTC-AATAA-TTTCCTGAACATTTCATGCTCGGGAAATCGCAT
66 GTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTCC-GAACATTCCATGCTCGGGAAATCGCAT
* * * *
71095 CATTTGGTCTAAATAGGTTT-TCATTTTGTACACAACTTTTTGTCTTTGAATTAAAAACTTACTT
129 CATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
** * *
71159 ACGTGAGAATAATTTCTCTCTTGGTTCTTGGAAGAACTTTCAAACTTGTCAAACTTTTACGAGTT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT
* * * * ** *
71224 CTTTTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTACTTCAAAAAAATTTC-CGAAC
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTC-GAGCAATTTCTAGAAC
* * **
71288 ATTCCATGCTTGGGAAATTGCATCATTAAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
322 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* *
71353 TCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
387 TCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* * * *
71399 TTCTTGGATGAACTTCCAAAC-ATGTCAAACTTTTACTAGTTCTTTTATAACTTCGATTCCTTAA
1 TTCTTGGACGAACTTCCGAACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * ** * * *
71463 AGTATACAAGATTG-TCCATTCCTTCAAGCAATTTTCTAAACATTCCACGCTCCGAAAATCGCAT
65 AGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCAT
* * ** * *
71527 CATTTGGTCTAAATAGTTTGTCAGTTTGTAAAAAAAATTTCGTCTTTGAATTAAAAAAATTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTT
* * * * ** * *
71592 ATGTGAGAGTTG-TT-TCTATTGGTTCTTGGATGAACTTCTGAACTTGTCAAAGTTTTACGATTT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT
* * * * * * *
71655 TTTTTATAACTTTGATTCCCTAAAGTATTCAAGATGATCCTTTCATTCGAGCAATTTTCT-TAAC
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTCTAGAAC
** * ** * *
71719 ATTTAATGGTCGAAAAATCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAA-------
322 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
*
71777 -C-------T------TT-TTTACGTGGGAA-TAGTTTCTCTCTTGG
387 TCTTTGAATTAAAAACTTATTTACGTGAGAATTA-TTTCTCTCTTGG
* * * * *
71808 TTCTTGGATGAACTTCCAAAC-ATGTCAAACTTTTACAAGTTCTTTTATAAGTTCGGTTCCTTGA
1 TTCTTGGACGAACTTCCGAACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * *
71872 AGTATTCAAGGCAATACATTCCTTCGAGCCATTTTTCGAGCATTTCATGCTCGGGAAATTGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
71937 ATTTTGTCCAAATAGTTTTTCATTTTGTAAACAA-CTTTGGTCATTT-AATTAAAAACTTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTA
* * ** * *
72000 CATGAGAAATT-TTTCTCTTTTGGTTCTTGGACGAACTTATAAACATGTCAAACTTTTACGAGGT
194 CGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT
* * * * * * * *
72064 CTTTTATAACTTTGGTTCCTTAAATTATACAAGACGGTCCATTCCTTTGAGTAAGTTTCCA-AAC
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTCTAGAAC
* * * *
72128 ATTTCAAGCTCGGGAAATCGCATCATTAGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAG
322 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* *
72193 TCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
387 TCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
* *
72239 TTCTTGGACGAACTTCCAAAC-ATGTCTAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
1 TTCTTGGACGAACTTCCGAACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * ** *
72303 AGCATACAAGACGGTTCATTCCTTCAAGCAATTTTTCGAACATTTCACACTCGAGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATC
* * *
72368 ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTTGTCTTTGAATTAAAAAATTTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTA
* ** * *
72433 CGTGAGAATTGTTT-T-TATTGGTTCTTGGACGAACTTCTGAACTTGTCAAAGTTTTGCGAGTTC
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTC
* * * * *
72496 TTTTATAATTTTGGTTCCTTAAAGTATTCAAGAAGATCCTTTCCTTCGAGCAATTTTCT-GAATA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTCTAGAACA
** * *
72560 TT---TAAT---GAAATCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAA--------
323 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
*
72611 C-------T------TT-TTTACATGAGAA-TAGTTTCTCTCTTGG
388 CTTTGAATTAAAAACTTATTTACGTGAGAATTA-TTTCTCTCTTGG
* * * *
72642 TTCTTAGACAAACTTCCAAAC-ATGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCGTTAA
1 TTCTTGGACGAACTTCCGAACTA-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* *
72706 AGTATACAAGACGATCCA----TT------A--TT-C---CA---C--GCTCAGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATC
72750 ATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACGTTTTGGTCTTTGAATTAAAAAACTTATTT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATT-AAAAACTTATTT
* * * * *
72814 ACGTAAGAATTG-TT-TCTATTGGTTCTTGGATGAACTTCCAAACTTGTTAAAGTTTTACGTA-T
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG-AGT
* * * * *
72876 TCTTTTATAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCTTTCCTTCGAGCAATTTTTCA-AA
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCT-AGAA
** * ** * * *
72940 CATTTAATGCTCAGGAAATCATATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT
321 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
73004 TTACGTGAGA
Statistics
Matches: 3537, Mismatches: 565, Indels: 222
0.82 0.13 0.05
Matches are distributed among these distances:
381 9 0.00
382 180 0.05
383 1 0.00
384 1 0.00
385 2 0.00
387 2 0.00
388 43 0.01
390 1 0.00
391 2 0.00
393 1 0.00
399 2 0.00
402 1 0.00
403 98 0.03
404 2 0.00
407 16 0.00
408 16 0.00
409 304 0.09
410 3 0.00
416 1 0.00
417 2 0.00
423 1 0.00
424 1 0.00
425 42 0.01
428 111 0.03
429 441 0.12
430 431 0.12
431 740 0.21
432 308 0.09
433 413 0.12
434 80 0.02
435 154 0.04
436 53 0.01
437 53 0.01
438 22 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (432 bp):
TTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTCTAGAACATTC
CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
TGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGG
Found at i:69227 original size:215 final size:216
Alignment explanation
Indices: 68378--72615 Score: 4268
Period size: 216 Copynumber: 19.8 Consensus size: 216
68368 TCTCTAGTGA
* * * * * *
68378 TTCTTGGACGAACTTTCGAACTAGTAAAACTTTTACGAATTCTTTTCTAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * *
68443 GCATTCAAGACGATCCTTTCCTTCGAGCAATTT-TCCAAACATTCCATGCTCGGTAAATCGC-CC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCT-CGAACATTCCATGCTCGGGAAATCGCATC
* * * * ** *
68506 TAGTTT-TTCTAAAAAGTTTGTCATTTTGTGTAACAGGTTTTACTCTTTCAATTAAAAACTTATT
130 -A-TTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
* *
68570 TACATGAGAATTGTTTCTATCTTGG
192 TACGTGAGAATTGTTTCTCTCTTGG
* * * * *
68595 TTATTGGACGAACTTCCAAACATATCAAACTGTTAGGAGGTT-TTTTATAACTTCGGTTCCTTAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAA
* * * *
68659 AGTATTCAAGATGGTCCATCCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATC
* *
68724 ATTTTGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
** *
68789 GTTTGAATTATTTCTCTCTTGG
195 GTGAGAATTGTTTCTCTCTTGG
* * * * ** * * *
68811 TTCTTGGAAGAACTTCCGAACTAGTAAAACTTTTACGAGTTCAATTATAACTTTGGTTCATTGAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * *
68876 GTATTCAAGACGATTCATTCCTTTGAGCAATTT-TCCGAACATTTCATGCTCGGGAAATCGCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCT-CGAACATTCCATGCTCGGGAAATCGCATC
* *
68940 ATTTGGTCAAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
69005 GTGAGAATTGTTTCTCTCTTGG
195 GTGAGAATTGTTTCTCTCTTGG
* * *
69027 TTCTTGGACGAACTTCCAAACATGTCAAACTTTTAAGAGTTCTTTTA-AACTTCGATTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
** * * * * * * *
69091 GTATTCAAGGTGGTACATTCCTTCGAACAATTTCTAGAACATTCCATGCACGGGAAATTGCATCT
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATCA
* * * * * * *
69156 TTTTGACTAAATAGTTTTTCATTTTCTAAACAAGTTTTGGTCTTTGAACTAAAAACTTTTTTACA
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
69221 TGAGAATT-ATT-TCTATTAG
196 TGAGAATTGTTTCTCTCTTGG
* **
69240 TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * ** * **
69305 GCATTCAAGACGATCCTTTCTTTCGAGCAATTTTTCGAACCCTCTATGCTTAGGAAATCGCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATCA
** * * * * * *
69370 TTTTTTCTAAA-ACTTTGTCATTTTGTAAACAAGTTTCGCTCTTTCAATTAAAAGCTTATTTAAG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
*
69434 TGAGAATCGTTTCTCTCTTGG
196 TGAGAATTGTTTCTCTCTTGG
* ** *
69455 TTCTTGGACGAACGTT-CAAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCATAA
1 TTCTTGGACGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * *
69519 AGTATTCAAGACGGTCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGTATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
69584 ATTTGGTCTAAATTGTTTGTCATTTTTTAAACAAGTTTTTGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * *
69649 TTGAGAACTG--TATCTATTGG
195 GTGAGAATTGTTTCTCTCTTGG
* * * * * *
69669 TTCTTGGACAAACTTCCGAACTTTTAAAACTTCTACGAGTTCCTTTATAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * **
69734 GTATTCAATG-CGATCCATTCCTTCAAGCAATTTTTCGAGCATTCCATGCTTTGGAAATCGCATC
66 GTATTCAA-GACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * * * *
69798 ATTTGGCCTAAGTAGTTTGTCATTTTGTAAACAACTTCTGTTGTTTGAATTAAAAACTTATTTAT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *
69863 GTGAGAATTATTTCTCTCTTGT
195 GTGAGAATTGTTTCTCTCTTGG
* * * * * * **
69885 TTCTTGGACGAACATT-CGAACTAGTAAAACTTTTACAATTTCTTTTAAAACTTTTGTTCCTTAA
1 TTCTTGGACGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * * *
69949 AGTATTTAAGATGATCCATTCTTTCAAGCAATTTTTTGAACATTCCATGCTCGAGAAATAGCATA
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATC
*
70014 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *
70078 GTGAGAATTATTTCTCTCTTTG
195 GTGAGAATTGTTTCTCTCTTGG
* * * *
70100 TTTTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTAGAACTTCGATTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
** * ** *
70165 GTATTTGAGACGATCCATTCCTTCGAGAAATTT-TCAGAACATTCCATGCTAAGTAAATCGCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTC-GAACATTCCATGCTCGGGAAATCGCATC
* * * *
70229 GTTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTAAATT-AAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
** * *
70293 CAGAGACTTGTTTCTCTTTTGG
195 GTGAGAATTGTTTCTCTCTTGG
* **** * * *
70315 TTTTTGGACGAACTTTTGCACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTATA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * ** *
70380 GTATTCAAGATGATCCATTCCTTAGAGAAATTT-TACGAACATTCCATGCTCAAGAAATCACATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCT-CGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
70444 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTAAATTATAAACTTATTTAT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *
70509 GTGAGAATT-ATT-TCTCTTAG
195 GTGAGAATTGTTTCTCTCTTGG
* * * *
70529 TTCTTGGATGAACTTCTGACACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAA
1 TTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * *
70594 AGTATTCAAGATGATCATCCATTCTTTCGAGCAATATTCT-GAACATTCCATACTCGAGAAATCG
65 AGTATTCAAGACG---ATCCATTCCTTCGAGCAAT-TTCTCGAACATTCCATGCTCGGGAAATCG
* *
70658 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAATTAAAAAACTTA
126 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTA
* * *
70723 ATTACGTAAGAATTGTTTTTCTCTTGG
190 TTTACGTGAGAATTGTTTCTCTCTTGG
* * * * * * *
70750 TTCTTGCACGAACTTCTAAACTTGTCAAGCTTTTATGACTTCTTTCACAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * *
70815 GTATTCAAGACGATTCATTCCTTTGAGCAATTT-TCCAAACATTCCATGCTTGGGAAATCTCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCT-CGAACATTCCATGCTCGGGAAATCGCATC
* * ** * *
70879 ATTTGGTCTAAATATTTTTTTCATTTCCTAAACAAGTTTTGGTCTTTCAATTAAAAACTTAATTA
130 ATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
*
70944 CGTGAGAATTGTTTCTATCTTGG
194 CGTGAGAATTGTTTCTCTCTTGG
* ** *** * * * * *
70967 TTCTTGCATAAACTTTTGAATTTGTCAAACTTTGATGAGTTCTTTCACAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * ** *
71032 GTATACAAGACGATCCATTTCTTTC-AATAATTTC-CTGAACATTTCATGCTCGGGAAATCGCAT
66 GTATTCAAGACGATCCA-TTCCTTCGAGCAATTTCTC-GAACATTCCATGCTCGGGAAATCGCAT
* * * *
71095 CATTTGGTCTAAATAGGTTT-TCATTTTGTACACAACTTTTTGTCTTTGAATTAAAAACTTACTT
129 CATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
**
71159 ACGTGAGAATAATTTCTCTCTTGG
193 ACGTGAGAATTGTTTCTCTCTTGG
* *
71183 TTCTTGGAAGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * ** * *
71248 GTATTCATGACGATCCATTACTTCAAAAAAATTTC-CGAACATTCCATGCTTGGGAAATTGCATC
66 GTATTCAAGACGATCCATTCCTTC-GAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATC
** *
71312 ATTAAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAACTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
71377 GTGAGAATTGTTTCTCTCTTGG
195 GTGAGAATTGTTTCTCTCTTGG
* * * *
71399 TTCTTGGATGAACTTCCAAACATGTCAAACTTTTACTAGTTCTTTTATAACTTCGATTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * * * *
71464 GTATACAAGATTG-TCCATTCCTTCAAGCAATTT-TCTAAACATTCCACGCTCCGAAAATCGCAT
66 GTATTCAAGA-CGATCCATTCCTTCGAGCAATTTCTC-GAACATTCCATGCTCGGGAAATCGCAT
* * ** * *
71527 CATTTGGTCTAAATAGTTTGTCAGTTTGTAAAAAAAATTTCGTCTTTGAATTAAAAAAATTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTT
* * *
71592 ATGTGAGAGTTG-TT-TCTATTGG
193 ACGTGAGAATTGTTTCTCTCTTGG
* ** * * * * * *
71614 TTCTTGGATGAACTTCTGAACTTGTCAAAGTTTTACGATTTTTTTTATAACTTTGATTCCCTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * ** * **
71679 GTATTCAAGATGATCCTTTCATTCGAGCAATTT-TCTTAACATTTAATGGTCGAAAAATCGCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTC-GAACATTCCATGCTCGGGAAATCGCATC
* * * * ** * *
71743 ATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT-TTACGTGGGAA-T----AGTT-TCT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-C-TTTGAATTAAAAACTTATTT
* * **
71801 -C-T----CTTGGTTCT-TGGAT-G
193 ACGTGAGAATTGTTTCTCT-CTTGG
** * * * * **
71818 AACTT--CCAAACATGT-CAAACTTTTACAAGTTCTTTTATAAG------T-T--C---GGTTCC
1 TTCTTGGACGAAC-T-TCCAAACTTGT-CAA--ACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * * * *
71868 TTGAAGTATTCAAGGCAATACATTCCTTCGAGCCATTTTTCGAGCATTTCATGCTCGGGAAATTG
61 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCG
* * * *
71933 CATCATTTTGTCCAAATAGTTTTTCATTTTGTAAACAA-CTTTGGTCATTT-AATTAAAAACTTA
126 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTA
* *
71996 TTTACATGAGAAATT-TTTCTCTTTTGG
190 TTTACGTGAG-AATTGTTTCTCTCTTGG
** * * *
72023 TTCTTGGACGAACTTATAAACATGTCAAACTTTTACGAGGTCTTTTATAACTTTGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * * * * *
72088 TTATACAAGACGGTCCATTCCTTTGAGTAAGTTTC-CAAACATTTCAAGCTCGGGAAATCGCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAA-TTTCTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
72152 ATTAGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAACTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
72217 GTGAGAATTGTTTCTCTCTTGG
195 GTGAGAATTGTTTCTCTCTTGG
* *
72239 TTCTTGGACGAACTTCCAAACATGTCTAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * * * * ** *
72304 GCATACAAGACGGTTCATTCCTTCAAGCAATTTTTCGAACATTTCACACTCGAGAAATCGCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATCA
* * *
72369 TTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTTGTCTTTGAATTAAAAAATTTATTTAC
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTAC
*
72434 GTGAGAATTGTTT-T-TATTGG
195 GTGAGAATTGTTTCTCTCTTGG
** * * * *
72454 TTCTTGGACGAACTTCTGAACTTGTCAAAGTTTTGCGAGTTCTTTTATAATTTTGGTTCCTTAAA
1 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * **
72519 GTATTCAAGAAGATCCTTTCCTTCGAGCAATTT-TCTGAATATT---TAAT---GAAATCGCATC
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTC-GAACATTCCATGCTCGGGAAATCGCATC
* * *
72577 ATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
72616 TTACATGAGA
Statistics
Matches: 3345, Mismatches: 581, Indels: 198
0.81 0.14 0.05
Matches are distributed among these distances:
192 2 0.00
193 6 0.00
194 87 0.03
195 2 0.00
197 4 0.00
198 2 0.00
199 2 0.00
200 2 0.00
202 3 0.00
203 18 0.01
204 16 0.00
205 13 0.00
206 13 0.00
207 5 0.00
209 49 0.01
210 4 0.00
212 3 0.00
213 101 0.03
214 278 0.08
215 1045 0.31
216 1079 0.32
217 387 0.12
218 127 0.04
219 21 0.01
220 55 0.02
221 21 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTCTCGAACATTCCATGCTCGGGAAATCGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGG
Found at i:71939 original size:194 final size:194
Alignment explanation
Indices: 71610--71974 Score: 453
Period size: 194 Copynumber: 1.9 Consensus size: 194
71600 GTTGTTTCTA
** * * * * * *
71610 TTGGTTCTTGGATGAACTTCTGAACTTGTCAAAGTTTTACGATTTTTTTTATAACTTTGATTCCC
1 TTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCC
** * * * *
71675 TAAAGTATTCAAGATGATCCTTTCATTCGAGCAATTTTCTTAACATTTAATGGTCGAAAAATCGC
66 TAAAGTATTCAAGACAATACATTCATTCGAGCAATTTTCTGAACATTTAATGCTCGAAAAATCGC
*
71740 ATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTTTACGTGGGAATAGTTTCTCTC
131 ATCATTTGGTCCAAAAAGTTTTTCATTTTGTAAACAACTTTTTTACGTGGGAATAGTTTCTCTC
* * *
71804 TTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACAAGTTCTTTTATAAGTTCGGTTCCT
1 TTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCC
* * * * * * ** *
71869 TGAAGTATTCAAGGCAATACATTCCTTCGAGCCATTTT-TCGAGCATTTCATGCTCGGGAAATTG
66 TAAAGTATTCAAGACAATACATTCATTCGAGCAATTTTCT-GAACATTTAATGCTCGAAAAATCG
* *
71933 CATCATTTTGTCCAAATAGTTTTTCATTTTGTAAACAACTTT
130 CATCATTTGGTCCAAAAAGTTTTTCATTTTGTAAACAACTTT
71975 GGTCATTTAA
Statistics
Matches: 141, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
193 1 0.01
194 140 0.99
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (194 bp):
TTGGTTCTTGGATGAACTTCCAAACATGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCC
TAAAGTATTCAAGACAATACATTCATTCGAGCAATTTTCTGAACATTTAATGCTCGAAAAATCGC
ATCATTTGGTCCAAAAAGTTTTTCATTTTGTAAACAACTTTTTTACGTGGGAATAGTTTCTCTC
Found at i:73032 original size:194 final size:188
Alignment explanation
Indices: 72429--73099 Score: 648
Period size: 194 Copynumber: 3.5 Consensus size: 188
72419 AAAAAATTTA
* * ** * *
72429 TTTACGTGAGAATTGTTTT-TATTGGTTCTTGGACGAACTTCTGAACTTGTCAAAGTTTTGCGAG
1 TTTACGTGAGAATAGTTTTCTATTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAG
* *
72493 TTCTTTTATAATTTTGGTTCCTTAAAGTATTCAAGAAGATCCTTTCCTTCGAGCAATTTTCTGAA
66 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAATTTTC--AA
* **
72558 TATTTAA--T-GAAATCGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTT
129 CATTTAATCTAGAAATCATATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTT
* * * *
72615 TTTACATGAGAATAGTTTCTCTCTTGGTTCTTAGACAAACTTCCAAACATGTCAAACTTTTACGA
1 TTTACGTGAGAATAGTTT-TCTATTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
* * * * * *
72680 GTTCTTTTATAACTTCGGTTCGTTAAAGTATACAAGACGATCCATTATTCC-ACGCTCAGGAAAT
65 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC--T-TTCCTTCG---AGCAATT
** * ** * * *
72744 CGCATCATTTGGTCTA-AATAGT-TTGTCATTT--TGTAAAAACGTTTTGGTC--TTTGAATTAA
124 TTCAACATTTAATCTAGAA-A-TCATATCATTTGGTCTAAAAA-GTTTT--TCATTTTG---TAA
* *
72803 AAAACTTA
181 ACAACTTT
* * ** * *
72811 TTTACGTAAGAATTG-TTTCTATTGGTTCTTGGATGAACTTCCAAACTTGTTAAAGTTTTACGTA
1 TTTACGTGAGAATAGTTTTCTATTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACG-A
*
72875 -TTCTTTTATAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCTTTCCTTCGAGCAATTTTTCAA
65 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAA-TTTTC-A
72939 ACATTTAATGCTCAGGAAATCATATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTT
128 ACATTTAAT-CT-A-GAAATCATATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTT
* * * *
73003 TTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTTTAAAACTTTTACCA
1 TTTACGTGAGAATAGTTT-TCTATTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGA
*
73068 GTTCTTTTATAACTTTGGTTCCCTAAAGTATT
65 GTTCTTTTATAACTTTGGTTCCTTAAAGTATT
73100 TATGAAATGA
Statistics
Matches: 382, Mismatches: 68, Indels: 62
0.75 0.13 0.12
Matches are distributed among these distances:
186 16 0.04
187 1 0.00
188 74 0.19
189 4 0.01
190 5 0.01
191 20 0.05
192 34 0.09
193 25 0.07
194 158 0.41
195 17 0.04
196 28 0.07
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (188 bp):
TTTACGTGAGAATAGTTTTCTATTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAATTTTCAACA
TTTAATCTAGAAATCATATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTT
Done.