Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014514.1 Kokia drynarioides strain JFW-HI SEQ_129553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94900
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 276 characters in sequence are not A, C, G, or T
Found at i:43 original size:14 final size:15
Alignment explanation
Indices: 24--69 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
14 AACCTAGCTA
24 ATTAATTACCAAAAT
1 ATTAATTACCAAAAT
*
39 A-TAATATA-AAAAAT
1 ATTAAT-TACCAAAAT
53 AATTAATTACCAAAAT
1 -ATTAATTACCAAAAT
69 A
1 A
70 ATATCCCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
14 9 0.36
15 7 0.28
16 9 0.36
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTAATTACCAAAAT
Found at i:67 original size:16 final size:16
Alignment explanation
Indices: 22--71 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
12 TAAACCTAGC
22 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
*
38 T-A-TAATATA-AAAAA
1 TAATTAAT-TACCAAAA
52 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
68 TAAT
1 TAAT
72 ATCCCTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATTAATTACCAAAA
Found at i:121 original size:43 final size:43
Alignment explanation
Indices: 74--159 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
64 AAAATAATAT
74 CCCTATCACATTATTTACTAAAATTTATTTTGTAGCATTTTAG
1 CCCTATCACATTATTTACTAAAATTTATTTTGTAGCATTTTAG
117 CCCTATCACATTATTTACTAAAATTTATTTTGTAGCATTTTAG
1 CCCTATCACATTATTTACTAAAATTTATTTTGTAGCATTTTAG
160 TAAATAATGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (43 bp):
CCCTATCACATTATTTACTAAAATTTATTTTGTAGCATTTTAG
Found at i:1451 original size:43 final size:41
Alignment explanation
Indices: 1360--1453 Score: 102
Period size: 43 Copynumber: 2.3 Consensus size: 41
1350 ATGTTATTCA
* *
1360 TTAACATGTTAAATTATATTACTTGACTCGTGTTAATATGG
1 TTAACATGTTAAATTATATTACTTGACTCGTATTAATATGC
* * *
1401 TT-GCATGTTACTAGATTATATTACTTTACTCTTATTAATAT-C
1 TTAACATGTTA--A-ATTATATTACTTGACTCGTATTAATATGC
1443 TTAACATGTTA
1 TTAACATGTTA
1454 TTAATTGTGC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
40 7 0.16
41 2 0.05
42 3 0.07
43 31 0.72
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.47
Consensus pattern (41 bp):
TTAACATGTTAAATTATATTACTTGACTCGTATTAATATGC
Found at i:2078 original size:45 final size:45
Alignment explanation
Indices: 2014--2150 Score: 179
Period size: 45 Copynumber: 3.0 Consensus size: 45
2004 CCCTAGCTCA
2014 TCAAGCAAAGGATATCAGCCTCAGTTTGACTAGCCACCGCAATAC
1 TCAAGCAAAGGATATCAGCCTCAGTTTGACTAGCCACCGCAATAC
* **
2059 TCAAGCTAAGGATATCAGCCTCAGTTTGA-TGAGCCACCATAATAC
1 TCAAGCAAAGGATATCAGCCTCAGTTTGACT-AGCCACCGCAATAC
** * *
2104 TCAAGGGAAGGATATCAAG-CTGAGTTTGACGAGCCACCGCAATAC
1 TCAAGCAAAGGATATC-AGCCTCAGTTTGACTAGCCACCGCAATAC
2149 TC
1 TC
2151 TACTCCTCCG
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 77 0.96
46 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (45 bp):
TCAAGCAAAGGATATCAGCCTCAGTTTGACTAGCCACCGCAATAC
Found at i:2397 original size:7 final size:7
Alignment explanation
Indices: 2382--2467 Score: 50
Period size: 7 Copynumber: 12.3 Consensus size: 7
2372 TAAATTTCAT
2382 AACCTTA
1 AACCTTA
*
2389 AACCCTA
1 AACCTTA
*
2396 AAACTTA
1 AACCTTA
2403 AACCTTA
1 AACCTTA
*
2410 AACCCT-
1 AACCTTA
*
2416 AAGCTTAA
1 AACCTT-A
* *
2424 AATCGTA
1 AACCTTA
2431 AACCTTA
1 AACCTTA
*
2438 AACTTTA
1 AACCTTA
*
2445 GA-CTTAA
1 AACCTT-A
*
2452 AACCCTA
1 AACCTTA
*
2459 AACCCTA
1 AACCTTA
2466 AA
1 AA
2468 TCCTATACAT
Statistics
Matches: 59, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
6 6 0.10
7 47 0.80
8 6 0.10
ACGTcount: A:0.45, C:0.27, G:0.03, T:0.24
Consensus pattern (7 bp):
AACCTTA
Found at i:2450 original size:28 final size:28
Alignment explanation
Indices: 2401--2472 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
2391 CCCTAAAACT
* *
2401 TAAACCTTAAACCCTAAGCTTAAAATCG
1 TAAACCTTAAACCCTAAGCTTAAAACCC
* *
2429 TAAACCTTAAA-CTTTAGACTTAAAACCC
1 TAAACCTTAAACCCTAAG-CTTAAAACCC
* *
2457 TAAACCCTAAATCCTA
1 TAAACCTTAAACCCTA
2473 TACATGAAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
27 4 0.11
28 29 0.83
29 2 0.06
ACGTcount: A:0.43, C:0.26, G:0.04, T:0.26
Consensus pattern (28 bp):
TAAACCTTAAACCCTAAGCTTAAAACCC
Found at i:8169 original size:42 final size:43
Alignment explanation
Indices: 8080--8169 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 43
8070 ATTTTAGCGG
* * * * *
8080 CGTTTGTGGGTAAAGCGTCACTAAAAACCATGTTCTTTAGCGG
1 CGTTTGTGGGAAAAACGTCACTAAAAACCATGTTCTATAACGA
* * *
8123 CGTTTGT-GGAAAAACGTCGCTAAAGACCCTGTTCTATAACGA
1 CGTTTGTGGGAAAAACGTCACTAAAAACCATGTTCTATAACGA
8165 CGTTT
1 CGTTT
8170 TTTCTCAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 32 0.82
43 7 0.18
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (43 bp):
CGTTTGTGGGAAAAACGTCACTAAAAACCATGTTCTATAACGA
Found at i:9339 original size:4 final size:4
Alignment explanation
Indices: 9317--9360 Score: 63
Period size: 4 Copynumber: 11.2 Consensus size: 4
9307 AACACATTAC
* *
9317 CTTT CTCT CCTT C-TT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
9361 CCATTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (4 bp):
CTTT
Found at i:14029 original size:51 final size:51
Alignment explanation
Indices: 13960--14102 Score: 196
Period size: 51 Copynumber: 2.8 Consensus size: 51
13950 CCGTATAGAA
* * * * *
13960 ATTCATATACTCATGATGACACTGAGTCATCGGACCTTTAATCCATCATGG
1 ATTCATTTACTCACGATGACACTAAGTCATCGGACCTTTAATCCATAAAGG
* *
14011 ATTCATTTACTCACGATGACACTAAGTCATCAGACCTTTAATCCGTAAAGG
1 ATTCATTTACTCACGATGACACTAAGTCATCGGACCTTTAATCCATAAAGG
* *
14062 ATTCATTTACTCACGATGTCACTTAGTCATCGGATCCTTTA
1 ATTCATTTACTCACGATGACACTAAGTCATCGGA-CCTTTA
14103 GTTTATAGCT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
51 75 0.93
52 6 0.07
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
ATTCATTTACTCACGATGACACTAAGTCATCGGACCTTTAATCCATAAAGG
Found at i:18912 original size:40 final size:40
Alignment explanation
Indices: 18857--18939 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
18847 TTGTTAAATG
*
18857 TTAATATTTTTGTCTTTGAATTCTTGGTTCGATTCCACTC
1 TTAATATTTTTGTCTTTGAATTCTTGATTCGATTCCACTC
18897 TTAATATTTTTGTCTTTGAATTCTTGATTCGATTCCACTC
1 TTAATATTTTTGTCTTTGAATTCTTGATTCGATTCCACTC
18937 TTA
1 TTA
18940 CTCACATTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (40 bp):
TTAATATTTTTGTCTTTGAATTCTTGATTCGATTCCACTC
Found at i:29976 original size:12 final size:12
Alignment explanation
Indices: 29959--29988 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
29949 TATAAAGCTC
29959 AAGCCTTGGGCA
1 AAGCCTTGGGCA
29971 AAGCCTTGGGCA
1 AAGCCTTGGGCA
29983 AAGCCT
1 AAGCCT
29989 CTGTGTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.17
Consensus pattern (12 bp):
AAGCCTTGGGCA
Found at i:31082 original size:23 final size:23
Alignment explanation
Indices: 31035--31082 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
31025 GGTCAAAATT
** *
31035 AAAATATAATTTTTATGATAGTA
1 AAAATATAATTTTTAAAAGAGTA
*
31058 AAAATATAATTTTTAAAAGATTA
1 AAAATATAATTTTTAAAAGAGTA
31081 AA
1 AA
31083 TAAAAAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (23 bp):
AAAATATAATTTTTAAAAGAGTA
Found at i:45395 original size:18 final size:18
Alignment explanation
Indices: 45372--45407 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
45362 GTGTCCACCT
*
45372 TCATTTTTAATGTATCCA
1 TCATTTTCAATGTATCCA
45390 TCATTTTCAATGTATCCA
1 TCATTTTCAATGTATCCA
45408 CCGCCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (18 bp):
TCATTTTCAATGTATCCA
Found at i:52802 original size:17 final size:18
Alignment explanation
Indices: 52765--52810 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
52755 AAAAAGAAAG
52765 AAATTTATTTTTGTTTAA
1 AAATTTATTTTTGTTTAA
52783 AAATTTATTTTTGTTTAA
1 AAATTTATTTTTGTTTAA
*
52801 AAATTAATTT
1 AAATTTATTT
52811 ATATTATGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (18 bp):
AAATTTATTTTTGTTTAA
Found at i:54730 original size:19 final size:19
Alignment explanation
Indices: 54694--54731 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
54684 TATTGTTTTC
*
54694 AATATTTTAAAATCAAATA
1 AATATTTTAAAATAAAATA
54713 AATA-TTTAAACATAAAATA
1 AATATTTTAAA-ATAAAATA
54732 CATTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AATATTTTAAAATAAAATA
Found at i:64219 original size:3 final size:3
Alignment explanation
Indices: 64211--64237 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
64201 TTTTTGTTTA
64211 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
64238 CTGATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:65048 original size:2 final size:2
Alignment explanation
Indices: 65041--65072 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
65031 AGCACTAGGG
65041 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65073 GAAGTTACGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68101 original size:23 final size:21
Alignment explanation
Indices: 68075--68120 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
68065 AAATTAAAAA
*
68075 AGTTAAACAAAATAAACTATGAT
1 AGTTAAA-AAAAT-AACTATAAT
*
68098 AGTTATAAAAATAACTATAAT
1 AGTTAAAAAAATAACTATAAT
68119 AG
1 AG
68121 ATTTAAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 5 0.24
23 6 0.29
ACGTcount: A:0.57, C:0.07, G:0.09, T:0.28
Consensus pattern (21 bp):
AGTTAAAAAAATAACTATAAT
Found at i:68113 original size:21 final size:22
Alignment explanation
Indices: 68083--68128 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
68073 AAAGTTAAAC
*
68083 AAAATAAACTATGATAG-TTATA
1 AAAATAAACTATAATAGATT-TA
68105 AAAAT-AACTATAATAGATTTA
1 AAAATAAACTATAATAGATTTA
68126 AAA
1 AAA
68129 GTTGAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (22 bp):
AAAATAAACTATAATAGATTTA
Found at i:78955 original size:33 final size:32
Alignment explanation
Indices: 78910--78978 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
78900 AAATTTGATA
* *
78910 ATATGAAATTATTCAACGGTATAATGAAATGTG
1 ATATGAAATTATTCAACGGCA-AATGAAATATG
* * *
78943 ATATGAATTTATTTAATGGCAAATGAAATATG
1 ATATGAAATTATTCAACGGCAAATGAAATATG
78975 ATAT
1 ATAT
78979 ATGAAATATC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.36
Consensus pattern (32 bp):
ATATGAAATTATTCAACGGCAAATGAAATATG
Found at i:89837 original size:31 final size:31
Alignment explanation
Indices: 89802--89863 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
89792 CTTAATAGCC
89802 CAGTGACTTAAATAAAAAATTTC-AACTAATT
1 CAGTGACTTAAATAAAAAATTTCGAA-TAATT
* *
89833 CAGTGACTTAAATGAAAACTTTCGAATAATT
1 CAGTGACTTAAATAAAAAATTTCGAATAATT
89864 TAATGACTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (31 bp):
CAGTGACTTAAATAAAAAATTTCGAATAATT
Found at i:89871 original size:31 final size:31
Alignment explanation
Indices: 89805--89871 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
89795 AATAGCCCAG
*
89805 TGACTTAAATAAAAAATTTCAACTAATTCAG
1 TGACTTAAATAAAAAATTTCAACTAATTCAA
* * *
89836 TGACTTAAATGAAAACTTTCGAA-TAATTTAA
1 TGACTTAAATAAAAAATTTC-AACTAATTCAA
89867 TGACT
1 TGACT
89872 ATTTTGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (31 bp):
TGACTTAAATAAAAAATTTCAACTAATTCAA
Found at i:94259 original size:29 final size:30
Alignment explanation
Indices: 94212--94268 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
94202 ATCGGAGTTC
*
94212 AAAATGAGACTTTTCGGATTCTCGAGGGCA
1 AAAATGAGAATTTTCGGATTCTCGAGGGCA
*
94242 AAAATGATAATTTT-GGATTCTCGAGGG
1 AAAATGAGAATTTTCGGATTCTCGAGGG
94269 GTGAAACAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (30 bp):
AAAATGAGAATTTTCGGATTCTCGAGGGCA
Found at i:94353 original size:29 final size:29
Alignment explanation
Indices: 94319--94557 Score: 225
Period size: 29 Copynumber: 8.2 Consensus size: 29
94309 ATTTTTTTTA
* *
94319 AAGTTTGGGGGTAAAAATAGGATTTTTGA
1 AAGTTTGGGGGTAAAAATGGGATTTTTGG
* *
94348 AAGTTTTGGGGTCAAAATGGGATTTTTGG
1 AAGTTTGGGGGTAAAAATGGGATTTTTGG
* * * * *
94377 AAGTTCGGTGGTAAAAACGGAATTTTTTG
1 AAGTTTGGGGGTAAAAATGGGATTTTTGG
*
94406 AAGTTTCGGGGGTCAAAAATGGGATTTTCGG
1 AAGTTT-GGGGGT-AAAAATGGGATTTTTGG
* * **
94437 AAGTTCGGGGGTAAAAACGAAATTTTTGG
1 AAGTTTGGGGGTAAAAATGGGATTTTTGG
*
94466 AAGTTTCGGGGTCAAAAATGGGATTTTTAGG
1 AAGTTTGGGGGT-AAAAATGGGATTTTT-GG
* * *
94497 -AG-TT-AGAGTAAAAAT-GGATTTTTTTG
1 AAGTTTGGGGGTAAAAATGGGA-TTTTTGG
* *
94523 AAGTTTCGGGGTCAAAATGGGATTTTTGG
1 AAGTTTGGGGGTAAAAATGGGATTTTTGG
94552 AAGTTT
1 AAGTTT
94558 TGGGACCTTC
Statistics
Matches: 167, Mismatches: 34, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.02
27 13 0.08
28 5 0.03
29 97 0.58
30 28 0.17
31 20 0.12
ACGTcount: A:0.30, C:0.05, G:0.31, T:0.34
Consensus pattern (29 bp):
AAGTTTGGGGGTAAAAATGGGATTTTTGG
Found at i:94425 original size:60 final size:57
Alignment explanation
Indices: 94341--94556 Score: 283
Period size: 60 Copynumber: 3.7 Consensus size: 57
94331 AAAAATAGGA
*
94341 TTTTTGAAAGTTTTGGGGTCAAAATGGGATTTTTGGAAGTTCGGTGGTAAAAACGGAAT
1 TTTTTG-AAGTTTCGGGGTCAAAATGGGATTTTTGGAAGTTCGG-GGTAAAAACGGAAT
* *
94400 TTTTTGAAGTTTCGGGGGTCAAAAATGGGATTTTCGGAAGTTCGGGGGTAAAAACGAAAT
1 TTTTTGAAGTTTC-GGGGTC-AAAATGGGATTTTTGGAAGTTC-GGGGTAAAAACGGAAT
* * * * *
94460 TTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTAGG-AGTT-AGAGTAAAAATGGATT
1 TTTTTGAAGTTTCGGGGTC-AAAATGGGATTTTT-GGAAGTTCGGGGTAAAAACGGAAT
94517 TTTTTGAAGTTTCGGGGTCAAAATGGGATTTTTGGAAGTT
1 TTTTTGAAGTTTCGGGGTCAAAATGGGATTTTTGGAAGTT
94557 TTGGGACCTT
Statistics
Matches: 141, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
55 2 0.01
56 18 0.13
57 29 0.21
58 6 0.04
59 36 0.26
60 48 0.34
61 2 0.01
ACGTcount: A:0.29, C:0.06, G:0.31, T:0.35
Consensus pattern (57 bp):
TTTTTGAAGTTTCGGGGTCAAAATGGGATTTTTGGAAGTTCGGGGTAAAAACGGAAT
Done.