Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014519.1 Kokia drynarioides strain JFW-HI SEQ_129558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8093
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3807 original size:27 final size:27

Alignment explanation


    Indices: 3777--3856  Score: 97
    Period size: 27  Copynumber: 3.0  Consensus size: 27

       3767 GACATCAATA

                *                      
       3777 AATAGCCTTTGTGGCAAATTCTAAATG
          1 AATAACCTTTGTGGCAAATTCTAAATG

                    *      *  *   *    
       3804 AATAACCTCTGTGGCGAACTCTGAATG
          1 AATAACCTTTGTGGCAAATTCTAAATG

                      *   *           
       3831 AATAACCTTTATGGTAAATTCTAAAT
          1 AATAACCTTTGTGGCAAATTCTAAAT

       3857 AAACAGTCTT


Statistics
Matches: 42,  Mismatches: 11, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  27   42  1.00

ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Consensus pattern (27 bp):   
AATAACCTTTGTGGCAAATTCTAAATG

Found at i:5988 original size:42 final size:42

Alignment explanation


    Indices: 5935--6051  Score: 146
    Period size: 42  Copynumber: 2.8  Consensus size: 42

       5925 TGGAAAGCGC

                *            *       *                 
       5935 CGCCACTAAAGA-CATGGTCTTTAGTGGAGTTTGTGGGGAAAG
          1 CGCCGCTAAAGACCATGTTCTTTAGCGGAGTTTGTGGGG-AAG

             *          *               *             
       5977 CTCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGGAAG
          1 CGCCGCTAAAGACCATGTTCTTTAGCGGAGTTTGTGGGGAAG

                    *                   *    
       6019 CGCCGCTACAGACCATGTTCTTTAGCGGCGTTT
          1 CGCCGCTAAAGACCATGTTCTTTAGCGGAGTTT

       6052 TTCCTCATAA


Statistics
Matches: 66,  Mismatches: 8, Indels: 2
        0.87            0.11        0.03

Matches are distributed among these distances:
  42   43  0.65
  43   23  0.35

ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29


Consensus pattern (42 bp):   
CGCCGCTAAAGACCATGTTCTTTAGCGGAGTTTGTGGGGAAG

Done.