Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001452.1 Kokia drynarioides strain JFW-HI SEQ_112970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1820
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31


Found at i:511 original size:48 final size:48

Alignment explanation


    Indices: 387--512  Score: 180
    Period size: 48  Copynumber: 2.6  Consensus size: 48

        377 ATTTAACTGG

                                  *     *                   
        387 GATGCATTTAACAAACAAAACATTTAATAATACAGATTACTAAACAAA
          1 GATGCATTTAACAAACAAAACACTTAATGATACAGATTACTAAACAAA

              *            *       *       **      *        
        435 GAAGCATTTAACAAATAAAACACATAATGATGTAGATTATTAAACAAA
          1 GATGCATTTAACAAACAAAACACTTAATGATACAGATTACTAAACAAA

                                          
        483 GATGCATTTAACAAACAAAACACTTAATGA
          1 GATGCATTTAACAAACAAAACACTTAATGA

        513 AACATAATTA


Statistics
Matches: 67,  Mismatches: 11, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  48   67  1.00

ACGTcount: A:0.53, C:0.13, G:0.09, T:0.25


Consensus pattern (48 bp):   
GATGCATTTAACAAACAAAACACTTAATGATACAGATTACTAAACAAA
Done.