Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014520.1 Kokia drynarioides strain JFW-HI SEQ_129559, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3359
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38


Found at i:1574 original size:2 final size:2

Alignment explanation


    Indices: 1561--1608  Score: 87
    Period size: 2  Copynumber: 24.0  Consensus size: 2

       1551 ACTTATAATT

                   *                                                      
       1561 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                    
       1603 TA TA TA
          1 TA TA TA

       1609 AAGAACAAAC


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   44  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2080 original size:32 final size:32

Alignment explanation


    Indices: 2038--2102  Score: 96
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       2028 CATAGATTAC

                                             
       2038 AACTTAAAAGTTA-TTGTCATGCATCTAAAAAT
          1 AACTTAAAAGTTATTTGT-ATGCATCTAAAAAT

                 *                *         
       2070 AACTTGAAAGTTATTTGTATGCCTCTAAAAAT
          1 AACTTAAAAGTTATTTGTATGCATCTAAAAAT

             
       2102 A
          1 A

       2103 TAGTTGTTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  32   26  0.87
  33    4  0.13

ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35


Consensus pattern (32 bp):   
AACTTAAAAGTTATTTGTATGCATCTAAAAAT
Done.