genome.fa.s14521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014521.1 Kokia drynarioides strain JFW-HI SEQ_129560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209620

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5216--5255	19	2.1	18	86	9	53	27	20	15	37	1.92
7009--7034	3	8.7	3	100	0	52	34	0	0	65	0.93
19763--19981	109	2.0	110	81	8	259	31	15	9	43	1.79
21203--21257	26	2.3	23	90	9	83	34	3	7	54	1.46
21700--21750	24	2.1	24	88	0	75	58	0	19	21	1.39
26742--26767	2	13.0	2	100	0	52	50	0	0	50	1.00
31158--31203	16	2.9	16	87	12	60	65	0	0	34	0.93
35331--35361	2	15.5	2	100	0	62	51	0	0	48	1.00
36084--36166	39	2.1	39	95	0	148	31	10	18	39	1.85
39138--39269	32	4.3	32	75	17	111	44	12	18	24	1.84
50179--50210	12	2.7	12	90	0	55	31	25	18	25	1.98
54030--54277	52	4.8	52	80	9	263	32	25	14	27	1.95
54030--54277	105	2.4	105	85	4	315	32	25	14	27	1.95
56085--56143	21	2.7	22	87	7	77	66	15	10	8	1.45
59265--59383	60	2.0	60	86	0	166	22	15	13	47	1.81
59530--59725	93	2.1	90	84	2	248	45	13	17	23	1.83
59609--59725	31	3.9	31	75	18	138	44	11	19	24	1.83
66077--66142	26	2.5	26	80	4	71	30	7	9	53	1.60
67933--67996	30	2.1	30	78	18	71	40	6	9	43	1.62
68948--68997	24	2.0	25	84	3	66	18	56	20	6	1.62
69592--69636	23	2.0	23	86	0	63	31	11	13	44	1.78
71973--72000	3	9.3	3	100	0	56	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73847--73872	13	2.0	13	100	0	52	76	7	0	15	0.99
82699--82747	16	3.3	15	74	23	50	51	0	0	48	1.00
82703--82745	16	2.6	17	89	7	63	53	0	0	46	1.00
85146--85185	21	2.0	21	85	5	55	75	0	0	25	0.81
98914--98963	24	2.1	23	85	10	66	44	4	0	52	1.20
121501--121564	31	2.1	31	87	0	92	39	14	6	40	1.71
126901--126950	6	8.2	6	81	14	50	64	2	4	30	1.23
128712--128750	15	2.6	15	95	0	69	53	5	35	5	1.45
137258--137323	18	4.0	16	82	7	80	39	1	1	57	1.17
137580--137604	13	1.9	13	100	0	50	32	8	4	56	1.47
137663--137705	20	2.0	22	91	8	72	55	0	4	39	1.20
137744--137806	25	2.7	22	82	17	83	41	1	3	53	1.26
137749--137799	25	2.1	23	92	7	84	43	0	3	52	1.19
156812--157173	191	1.9	190	85	2	494	31	13	12	41	1.82
157873--157907	5	7.0	5	100	0	70	60	0	0	40	0.97
162089--162113	6	4.2	6	100	0	50	32	0	0	68	0.90
164582--164610	6	4.8	6	100	0	58	51	34	0	13	1.42
172295--172323	12	2.3	13	94	5	51	72	0	0	27	0.85
174078--174123	25	1.9	24	91	8	76	60	0	0	39	0.97
174769--174857	43	2.2	42	92	8	148	38	2	8	49	1.47
175924--175958	2	17.0	2	94	5	61	48	0	2	48	1.16
178896--178972	32	2.4	31	79	14	84	53	5	10	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181722--181763	2	21.5	2	92	4	68	45	0	2	52	1.13
194750--194841	7	12.9	7	70	16	55	36	3	1	58	1.21
194785--194841	22	2.6	22	72	5	62	36	3	0	59	1.14
194746--194839	29	3.2	29	80	5	109	36	3	1	59	1.20
194832--194867	16	2.3	15	90	4	54	41	5	0	52	1.24
200788--200939	36	4.2	36	85	1	180	15	25	24	35	1.94
200788--200947	72	2.2	72	84	2	205	15	25	23	36	1.93
201179--201332	63	2.4	63	79	6	168	27	7	29	35	1.84
204571--204625	17	3.4	17	65	10	51	20	9	32	38	1.84
209322--209393	20	3.5	21	78	17	80	6	2	22	68	1.27
209333--209400	21	3.3	19	82	13	82	7	1	17	73	1.13
209333--209400	20	3.4	19	82	11	82	7	1	17	73	1.13
209417--209473	24	2.4	24	85	8	73	8	5	19	66	1.38
209428--209481	12	4.6	12	83	4	65	9	3	16	70	1.28

Tables:   1

The End!