genome.fa.s14522.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014522.1 Kokia drynarioides strain JFW-HI SEQ_129561, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96360

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2465--2506	20	2.1	20	86	8	59	47	14	4	33	1.65
3396--3420	2	12.5	2	100	0	50	48	0	0	52	1.00
4706--4749	23	1.9	23	90	0	70	61	4	2	31	1.28
4710--4752	11	3.8	11	80	17	52	65	2	2	30	1.18
20601--20641	2	20.5	2	100	0	82	51	0	0	48	1.00
25521--25589	26	2.9	23	87	8	86	47	13	23	15	1.80
25544--25614	26	2.7	26	95	0	124	47	16	22	12	1.80
25548--25649	26	4.2	23	80	13	80	49	16	20	13	1.80
25548--25697	23	6.3	23	78	11	126	47	19	21	12	1.81
27855--27912	28	2.1	28	86	0	80	39	13	24	22	1.90
32876--33106	33	7.0	33	81	3	250	26	19	23	30	1.98
40668--40694	7	3.9	7	100	0	54	44	29	0	25	1.54
43786--43865	39	2.1	39	95	0	142	32	16	18	32	1.93
51724--51759	18	2.0	18	88	0	54	44	13	0	41	1.44
58410--58476	26	2.6	25	75	13	73	40	2	4	52	1.37
59181--59230	3	16.3	3	80	12	57	62	2	0	36	1.07
60346--60626	60	4.8	57	84	8	250	37	27	1	33	1.66
60346--60671	60	5.6	58	81	8	249	37	27	1	33	1.67
60346--60671	29	11.1	28	75	12	262	37	27	1	33	1.67
60346--60626	29	9.6	29	78	11	263	37	27	1	33	1.66
65322--65374	3	17.7	3	92	0	88	69	0	28	1	0.99
65919--65994	13	6.5	11	74	18	55	77	1	17	3	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65889--65994	34	3.1	33	79	15	101	76	0	16	5	1.03
65919--65994	25	3.2	23	77	18	68	77	1	17	3	0.99
65924--65978	13	4.2	13	76	6	58	78	0	16	5	0.93
66931--67192	50	5.3	50	74	6	214	32	17	31	18	1.94
67016--67218	49	4.1	49	77	4	160	34	14	30	20	1.93
67066--67253	99	1.9	99	83	2	243	34	17	28	19	1.94
67413--67503	41	2.2	41	88	0	128	35	18	15	30	1.92
67514--67620	39	2.7	39	77	5	126	26	32	17	23	1.97
67514--67671	78	2.0	78	87	2	228	25	30	20	24	1.98
67562--67680	39	3.1	39	71	15	102	23	31	20	25	1.98
67650--67797	77	1.9	78	83	4	192	22	27	20	29	1.99
67569--67816	116	2.1	116	79	3	266	23	30	18	27	1.98
68059--68131	37	2.0	37	94	0	128	34	15	23	27	1.94
67919--69349	209	6.9	207	83	3	1444	37	17	21	23	1.94
70083--70303	58	3.8	58	77	10	227	38	24	0	36	1.62
70083--70336	29	8.9	28	74	16	186	37	24	0	36	1.62
74974--75029	18	3.1	17	71	19	51	35	3	1	58	1.26
75453--75502	18	2.8	18	93	0	82	12	32	22	34	1.90
75813--75844	10	3.2	10	90	0	55	15	0	0	84	0.63
75813--75853	20	2.0	20	90	0	64	12	2	2	82	0.86
86228--86295	31	2.2	31	83	0	91	42	10	14	32	1.80

Tables:   1

The End!