Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014529.1 Kokia drynarioides strain JFW-HI SEQ_129568, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3245
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:2997 original size:29 final size:29

Alignment explanation


    Indices: 2955--3022  Score: 91
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       2945 CACGAGCTAG

                 *   *      *            
       2955 ACACATGGGAGTGTGATAGGCCGTGTGTC
          1 ACACACGGGCGTGTGACAGGCCGTGTGTC

                              *          
       2984 ACACACGGGCGTGTGACATGCCGTGTGTC
          1 ACACACGGGCGTGTGACAGGCCGTGTGTC

               *      
       3013 ACAGACGGGC
          1 ACACACGGGC

       3023 TAGCACATGA


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  29   34  1.00

ACGTcount: A:0.21, C:0.24, G:0.37, T:0.19


Consensus pattern (29 bp):   
ACACACGGGCGTGTGACAGGCCGTGTGTC
Done.