Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014533.1 Kokia drynarioides strain JFW-HI SEQ_129572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4484
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Found at i:3391 original size:26 final size:26

Alignment explanation


    Indices: 3340--3391  Score: 61
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       3330 AACAAATTTG

                         *       *    
       3340 TTCCAAGTTCCAAGGTCCAAGGAAAT
          1 TTCCAAGTTCCAAAGTCCAAGAAAAT

                      *                
       3366 TTCCAAGTTCTAAAG-CCACAGAAAAT
          1 TTCCAAGTTCCAAAGTCCA-AGAAAAT

       3392 AGGTTTATTT


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  25    3  0.14
  26   19  0.86

ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23


Consensus pattern (26 bp):   
TTCCAAGTTCCAAAGTCCAAGAAAAT

Found at i:3775 original size:18 final size:18

Alignment explanation


    Indices: 3752--3800  Score: 55
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       3742 AAATCAAAAT

                              
       3752 ATTTATAATAATTTCAAA
          1 ATTTATAATAATTTCAAA

                       *   *   
       3770 ATTTAT-ATATTTTTTAAA
          1 ATTTATAATA-ATTTCAAA

                    *    
       3788 ATTTATAAAAATT
          1 ATTTATAATAATT

       3801 ATAAAAAATA


Statistics
Matches: 25,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  17    3  0.12
  18   20  0.80
  19    2  0.08

ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51


Consensus pattern (18 bp):   
ATTTATAATAATTTCAAA
Done.