genome.fa.s14534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014534.1 Kokia drynarioides strain JFW-HI SEQ_129573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188460

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--1199	215	5.6	216	80	5	1272	27	17	14	41	1.87
1--1199	432	2.8	427	81	6	1324	27	17	14	41	1.87
1105--1299	99	2.0	98	88	3	293	26	20	13	39	1.90
1203--2559	216	6.4	216	77	8	1055	28	16	14	41	1.87
2395--2754	195	1.8	195	82	3	456	25	21	14	38	1.91
2184--2970	411	1.9	405	83	4	1026	27	17	14	40	1.88
3399--7291	216	17.9	216	75	8	2994	28	16	13	40	1.87
3067--7288	860	4.9	859	79	7	4097	28	16	13	41	1.87
7154--7442	154	1.9	154	89	2	456	28	14	15	41	1.87
6932--7658	370	2.0	370	83	3	935	28	16	14	40	1.88
7300--8738	216	6.7	215	84	3	1732	27	17	13	41	1.87
6484--8089	802	2.0	804	83	3	2031	27	16	14	40	1.88
6713--7870	586	2.0	587	84	3	1501	28	16	14	40	1.88
13246--13281	10	3.5	10	92	7	63	11	0	0	88	0.50
13247--13280	17	1.9	18	94	5	61	11	0	0	88	0.52
16043--16094	15	3.5	14	76	19	52	76	5	1	15	1.05
16105--16185	29	2.8	29	68	11	67	61	4	13	19	1.50
18898--18928	14	2.3	14	94	5	55	51	19	6	22	1.69
26832--27175	43	8.0	43	89	2	469	34	9	19	36	1.84
26832--27121	85	3.4	86	94	0	485	33	8	19	37	1.83
26832--27175	128	2.7	128	88	2	485	34	9	19	36	1.84
27797--27824	14	2.0	14	100	0	56	28	0	7	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27857--27896	17	2.4	17	86	0	53	7	5	30	57	1.48
30039--30072	16	2.0	18	88	11	54	70	0	23	5	1.09
33073--33123	26	2.0	26	92	0	84	27	25	19	27	1.99
33117--33197	38	2.2	38	84	6	103	32	12	23	32	1.92
33572--33756	40	4.6	40	82	2	217	27	23	18	31	1.97
33572--33756	80	2.3	82	85	4	250	27	23	18	31	1.97
33728--33784	25	2.3	25	100	0	114	26	19	17	36	1.94
35000--35063	27	2.4	28	81	7	78	32	15	25	26	1.95
35987--36052	31	2.1	31	82	0	78	46	12	19	21	1.82
43510--43717	102	2.0	101	90	2	328	26	15	25	32	1.95
48104--48184	29	2.8	29	78	0	90	55	7	3	33	1.45
49547--49613	34	2.0	33	91	2	107	38	11	14	34	1.84
54862--55076	37	5.8	37	80	1	223	13	24	29	32	1.94
61888--61928	19	2.2	19	90	0	64	0	17	0	82	0.66
63232--63277	21	2.2	21	88	0	65	6	28	13	52	1.65
64742--65047	110	2.8	104	84	8	391	53	4	3	38	1.38
64741--65057	109	2.9	107	84	8	410	53	4	3	38	1.38
65121--65168	19	2.5	20	75	21	50	54	0	0	45	0.99
78763--78787	12	2.1	12	100	0	50	40	16	8	36	1.77
85103--85141	19	2.1	19	90	0	60	58	12	12	15	1.62
94733--94896	37	4.4	37	81	0	157	15	23	30	29	1.96
99583--99621	14	2.7	15	84	4	53	35	0	12	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101318--101381	24	2.7	25	78	9	62	28	18	23	29	1.98
106336--106404	31	2.4	29	77	15	72	4	28	1	65	1.21
112688--112732	19	2.5	18	86	13	58	37	2	2	57	1.23
121571--121740	85	2.0	85	100	0	340	21	10	20	48	1.79
123319--123357	16	2.5	15	92	8	69	46	5	5	43	1.48
129506--129538	17	1.9	17	100	0	66	57	6	18	18	1.60
164505--164540	14	2.6	14	91	8	56	86	8	5	0	0.72
166879--166911	10	3.1	11	86	8	50	30	0	27	42	1.56
174061--174124	27	2.3	30	84	12	84	67	7	25	0	1.17

Tables:   1

The End!