genome.fa.s14538.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014538.1 Kokia drynarioides strain JFW-HI SEQ_129577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245537

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127--200	12	6.1	12	73	7	51	66	18	4	10	1.38
183--230	22	2.2	22	96	0	87	68	16	6	8	1.35
184--243	18	3.1	18	81	15	66	65	20	6	8	1.43
266--312	23	2.0	24	91	4	78	70	23	4	2	1.16
8695--8736	20	2.2	20	83	12	52	69	7	0	23	1.13
8855--8955	10	10.7	9	71	16	71	62	0	1	34	1.13
8855--8955	19	5.3	18	71	16	71	62	0	1	34	1.13
8854--8931	28	2.8	27	88	7	111	61	0	1	37	1.04
9166--9229	18	3.4	19	80	18	71	46	0	0	53	1.00
9167--9227	19	3.2	20	79	11	65	45	0	0	54	1.00
10992--11061	25	2.8	25	78	12	63	35	0	0	64	0.94
12013--12084	31	2.4	30	83	4	90	34	11	12	41	1.78
12227--12285	29	2.0	30	86	3	84	49	15	6	28	1.70
13992--14051	21	2.9	21	82	0	66	33	23	13	30	1.93
14768--14860	18	5.2	18	67	14	66	32	23	18	25	1.97
31798--31878	30	2.6	30	78	7	74	34	9	9	45	1.71
34191--34235	16	2.6	18	82	10	58	62	4	2	31	1.27
34223--34281	20	2.9	21	78	14	54	59	3	1	35	1.24
34182--34337	9	16.4	9	69	15	82	58	5	3	32	1.36
39141--39183	2	21.5	2	100	0	86	48	0	51	0	1.00
40355--40422	30	2.3	30	81	0	82	35	22	19	23	1.96
41584--41617	17	2.0	17	88	0	50	35	2	2	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44724--44761	2	19.0	2	100	0	76	50	0	0	50	1.00
46597--46622	13	2.0	13	100	0	52	53	7	7	30	1.57
48748--48805	29	2.0	29	83	10	73	27	15	8	48	1.74
51240--51298	31	1.9	31	100	0	118	32	23	5	38	1.77
51665--51693	3	9.7	3	100	0	58	34	0	0	65	0.93
52128--52161	16	2.1	17	88	5	52	44	20	5	29	1.75
54265--54295	2	15.5	2	100	0	62	51	0	0	48	1.00
56876--56908	16	2.1	16	88	5	50	60	3	21	15	1.48
57303--57494	59	3.2	57	73	11	172	50	3	4	42	1.39
67880--67930	22	2.3	23	89	3	77	35	3	0	60	1.15
71052--71111	26	2.4	25	77	2	66	53	1	6	38	1.37
77915--77967	15	3.7	15	75	10	56	15	15	0	69	1.19
77918--77986	28	2.5	28	92	0	111	11	15	0	72	1.12
81558--81596	17	2.3	17	86	0	51	48	12	15	23	1.79
85273--85700	29	14.7	29	73	14	165	36	24	3	35	1.74
85319--85761	29	15.2	28	71	13	152	34	26	5	34	1.79
85303--85695	87	4.5	87	79	6	341	36	24	3	35	1.74
85562--85772	59	3.6	57	77	11	196	35	25	6	32	1.82
85303--85759	88	5.2	88	78	3	363	34	25	5	34	1.78
86102--86150	24	2.0	24	100	0	98	30	20	20	28	1.98
92050--93050	391	2.6	389	85	2	1317	38	17	25	18	1.93
92050--93079	98	10.5	97	87	2	1186	37	17	24	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92050--93050	49	20.5	49	70	10	573	38	17	25	18	1.93
93327--93775	39	11.5	39	68	6	156	24	29	18	26	1.98
93315--93805	78	6.3	77	80	4	423	25	30	18	26	1.98
93315--93805	233	2.1	233	81	2	574	25	30	18	26	1.98
93600--93806	39	5.3	39	72	13	149	26	29	17	26	1.97
95811--96154	29	12.0	29	76	11	155	36	24	2	36	1.70
95808--96036	29	7.9	29	82	4	189	36	24	2	36	1.68
118729--118791	17	3.9	16	76	23	69	68	11	12	7	1.40
118723--118784	31	2.0	30	96	3	115	72	9	11	6	1.27
118723--118771	14	3.3	15	75	25	50	75	10	10	4	1.17
119490--119516	14	1.9	14	100	0	54	22	22	33	22	1.97
121936--121969	16	2.1	16	94	0	59	20	11	8	58	1.59
122778--122967	31	6.3	30	70	16	106	47	11	17	24	1.80
122892--122946	28	2.0	28	85	7	76	54	3	16	25	1.58
122783--122955	91	1.9	90	84	3	231	47	10	17	23	1.78
128623--128659	16	2.3	16	100	0	74	18	24	16	40	1.90
141990--142058	26	2.7	26	88	0	102	27	27	17	27	1.98
144257--144354	24	4.3	23	74	10	76	55	2	1	41	1.18
144275--144337	11	5.5	11	72	12	56	55	1	0	42	1.09
144247--144353	45	2.3	46	87	4	153	55	1	0	42	1.17
144367--144429	15	4.1	15	73	15	65	44	1	1	52	1.20
149849--149877	2	14.5	2	100	0	58	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152478--152519	13	3.2	13	78	18	50	52	4	0	42	1.22
157743--157776	17	2.0	17	94	0	59	50	0	11	38	1.39
162944--163031	39	2.3	38	84	4	113	38	5	19	36	1.75
166473--166523	21	2.4	21	86	0	66	25	31	19	23	1.98
168134--168172	21	2.0	20	85	14	55	56	15	12	15	1.68
183529--183581	27	2.0	27	88	7	81	26	32	24	16	1.97
185359--185416	23	2.5	23	88	0	80	31	25	18	24	1.98
190122--190154	17	1.9	17	88	11	50	48	3	0	48	1.17
190126--190176	25	2.0	27	84	7	70	54	3	0	41	1.19
190515--190551	19	1.9	19	88	0	56	62	0	2	35	1.10
192076--192228	67	2.3	67	95	0	270	55	3	0	40	1.21
192745--193210	79	5.9	78	86	3	592	24	17	26	31	1.97
192745--193210	158	2.9	158	88	0	691	24	17	26	31	1.97
196994--197031	19	2.0	19	100	0	76	31	5	15	47	1.68
197453--198113	328	2.0	329	93	1	1121	43	11	10	34	1.75
198838--198899	15	3.9	15	76	6	52	67	1	0	30	1.00
198836--198893	26	2.2	26	79	14	66	67	1	0	31	1.01
198853--198899	15	3.1	15	81	3	58	70	0	0	29	0.88
200324--200354	16	2.0	16	93	6	55	19	0	9	70	1.14
202028--202056	14	2.1	14	100	0	58	65	0	27	6	1.18
205821--206223	23	17.3	23	85	2	500	34	4	14	46	1.64
206303--206407	36	2.9	37	81	1	122	30	11	21	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209055--209420	183	2.0	183	98	0	714	46	15	12	25	1.81
211222--211265	21	2.0	22	91	8	72	59	0	0	40	0.98
211442--211587	69	2.2	64	83	8	168	54	3	2	40	1.29
211577--211609	2	16.5	2	100	0	66	51	0	0	48	1.00
212334--212378	22	2.0	24	82	8	58	8	35	2	53	1.45
217999--218023	3	8.3	3	100	0	50	68	0	0	32	0.90
223766--223792	13	2.1	13	100	0	54	22	7	37	33	1.82
238229--238268	20	2.0	20	100	0	80	25	15	35	25	1.94
241921--242079	28	5.8	27	82	6	149	25	13	22	38	1.90
241921--242051	27	4.8	27	84	6	156	25	12	22	39	1.89
241927--242051	55	2.3	55	90	2	189	24	12	22	40	1.88
241929--242081	55	2.8	54	85	6	182	23	13	22	40	1.89

Tables:   1

The End!