genome.fa.s14546.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014546.1 Kokia drynarioides strain JFW-HI SEQ_129585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  267279

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3638--3670	17	1.9	17	93	0	57	54	15	15	15	1.71
18654--18692	19	2.1	19	90	0	60	25	33	23	17	1.96
23807--23848	22	1.9	22	90	0	66	23	26	11	38	1.90
25470--25905	189	2.3	189	88	2	624	23	16	26	33	1.96
29144--29178	18	1.9	18	88	0	52	48	5	0	45	1.26
30263--30296	17	2.0	17	94	0	59	47	11	2	38	1.55
54646--54705	29	2.0	31	87	6	88	31	0	3	65	1.09
55480--55537	30	2.0	28	83	12	73	53	0	0	46	1.00
60512--60546	2	17.5	2	100	0	70	51	0	0	48	1.00
61598--61826	29	7.7	29	81	6	212	36	5	21	36	1.77
61610--61850	59	4.1	59	79	7	233	36	4	20	38	1.74
63662--63793	50	2.6	50	86	2	185	21	21	19	37	1.94
73958--74191	88	2.7	89	82	7	255	35	4	20	38	1.74
73970--74202	58	3.9	58	78	9	197	36	4	21	37	1.74
73970--74201	30	7.9	29	79	8	202	36	4	21	37	1.74
76327--76373	24	2.0	24	83	8	60	53	4	0	42	1.20
76758--76814	29	2.0	29	82	0	69	52	1	3	42	1.28
80844--80878	3	11.7	3	93	0	61	2	0	28	68	1.04
81346--81380	12	2.9	12	88	12	54	62	0	0	37	0.95
82822--82905	26	3.3	26	86	3	125	21	19	29	29	1.97
94928--94995	34	2.0	34	100	0	136	52	8	11	26	1.67
95393--95464	31	2.3	32	83	7	94	50	8	12	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99601--99666	27	2.4	28	80	16	75	34	0	0	65	0.93
99601--99673	30	2.8	25	74	24	62	34	0	0	65	0.93
100513--100537	13	1.9	13	100	0	50	72	0	0	28	0.86
109747--109794	20	2.2	21	78	17	53	66	4	6	22	1.32
109784--109872	22	3.9	23	72	8	65	74	4	3	17	1.13
111105--111764	50	13.3	50	82	2	623	22	20	16	40	1.91
111586--111675	44	2.0	44	95	0	162	18	22	16	42	1.89
111230--111839	150	4.2	144	79	8	351	23	20	17	39	1.92
115043--115090	19	2.5	19	86	3	60	10	16	20	52	1.73
118246--118304	18	3.3	18	95	0	109	33	25	5	35	1.78
120036--120068	10	3.3	10	95	0	57	30	6	42	21	1.77
120454--120535	39	2.1	39	97	0	155	57	13	4	24	1.56
121586--121637	21	2.5	21	96	0	95	36	25	15	23	1.93
122231--122287	26	2.2	26	87	0	78	35	15	17	31	1.92
123734--123920	52	3.6	51	87	2	268	35	22	14	26	1.93
124380--124446	33	2.0	33	100	0	134	31	17	2	47	1.63
130136--130184	21	2.3	21	75	0	53	38	24	10	26	1.87
132375--132416	20	2.0	22	90	9	70	35	16	0	47	1.47
134481--134518	2	19.0	2	100	0	76	50	0	50	0	1.00
137549--137615	18	3.6	17	82	15	71	74	2	0	22	0.95
137505--137615	10	11.2	10	68	22	65	71	3	2	22	1.15
137552--137606	19	3.0	18	86	7	67	72	3	0	23	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137526--137675	69	2.1	70	80	7	171	69	4	4	21	1.25
137505--137615	20	5.6	19	73	16	84	71	3	2	22	1.15
137526--137700	69	2.5	69	78	8	151	68	5	4	22	1.28
137826--137875	26	2.0	25	84	4	64	72	6	4	18	1.22
137917--137950	13	2.5	14	85	4	52	76	5	0	17	0.98
137993--138040	24	1.9	25	84	16	64	64	8	4	22	1.38
137855--138046	101	1.9	100	84	8	253	67	6	5	21	1.33
138988--139061	31	2.4	32	79	6	89	50	6	13	29	1.67
151063--151108	22	2.1	22	100	0	92	36	13	8	41	1.75
166205--166473	40	6.7	40	79	1	261	36	22	18	23	1.95
166245--166471	120	1.9	120	85	0	310	37	23	17	22	1.94
168389--168439	21	2.4	21	90	0	84	27	5	13	52	1.63
169234--169328	47	2.0	48	95	2	174	31	17	10	40	1.84
174733--174779	17	2.8	17	81	15	53	51	12	10	25	1.72
175193--175239	3	15.7	3	79	16	53	2	27	0	70	0.99
183535--183611	21	3.7	21	72	6	66	33	25	10	29	1.89
186296--186334	18	2.2	18	85	0	51	25	12	41	20	1.88
189541--189678	36	3.8	36	79	0	132	36	12	25	25	1.91
194006--194106	36	2.8	36	84	1	121	37	12	25	23	1.91
194580--194831	116	2.2	116	84	9	336	26	9	27	36	1.87
195692--195893	101	2.0	100	98	0	386	28	19	19	31	1.96
198781--198815	18	1.9	18	88	0	52	14	5	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198781--198808	6	4.7	6	100	0	56	14	0	0	85	0.59
200668--200760	22	4.2	22	88	1	123	10	23	21	44	1.84
208900--208955	21	2.7	21	88	0	76	35	25	12	26	1.91
208921--208963	21	2.0	21	86	0	59	34	27	9	27	1.88
211579--211621	21	2.0	21	82	8	52	34	25	6	32	1.83
227286--227350	22	2.9	22	76	2	58	41	18	23	16	1.90
236487--236513	13	2.1	13	100	0	54	62	7	0	29	1.22
238292--238439	56	2.6	56	82	10	178	27	22	12	37	1.90
240430--240618	80	2.4	80	90	0	279	34	23	19	22	1.96
244151--244188	18	2.1	18	90	9	60	2	28	0	68	1.03
244151--244196	13	3.0	15	84	15	51	2	28	0	69	1.00
253242--253445	56	3.6	56	93	1	311	28	22	12	36	1.90
255588--255628	19	2.2	19	95	0	73	46	9	4	39	1.58
257966--258002	19	1.9	19	94	0	65	37	13	8	40	1.74
262807--262836	3	10.0	3	100	0	60	33	0	0	66	0.92
263564--263641	29	2.6	29	80	13	79	33	7	12	46	1.71

Tables:   1

The End!