Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014547.1 Kokia drynarioides strain JFW-HI SEQ_129586, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121784
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 283 characters in sequence are not A, C, G, or T
Found at i:2988 original size:15 final size:16
Alignment explanation
Indices: 2968--3000 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2958 AAATTTGTAT
*
2968 TATTTT-AATATTAAA
1 TATTTTAAAAATTAAA
2983 TATTTTAAAAATTAAA
1 TATTTTAAAAATTAAA
2999 TA
1 TA
3001 ACTTTAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTTAAAAATTAAA
Found at i:7408 original size:22 final size:20
Alignment explanation
Indices: 7374--7416 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
7364 TAAACATAAA
7374 ATTAAATAAATTCACAATTAAT
1 ATTAAATAAATTC-C-ATTAAT
**
7396 ATTAAATTTATTCCATTAAT
1 ATTAAATAAATTCCATTAAT
7416 A
1 A
7417 AAATATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 1 0.05
22 11 0.58
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTAAATAAATTCCATTAAT
Found at i:7956 original size:29 final size:30
Alignment explanation
Indices: 7893--7957 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
7883 ACCATTGAAT
*
7893 CTAAATTTTAAAATATAAAAAGCAAAGGGA
1 CTAAATTTTAAAATATAAAAAGCAAAAGGA
* * *
7923 TTAAATTCTTGAAA-AT-AAAAGTAAAAGGA
1 CTAAATT-TTAAAATATAAAAAGCAAAAGGA
7952 CTAAAT
1 CTAAAT
7958 CTAAATTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
29 16 0.55
30 8 0.28
31 5 0.17
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.26
Consensus pattern (30 bp):
CTAAATTTTAAAATATAAAAAGCAAAAGGA
Found at i:8437 original size:31 final size:30
Alignment explanation
Indices: 8374--8437 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
8364 CAATCCAACG
* * *
8374 ATTTAAAAAAAAAATTCGAATAATTTAGTA
1 ATTTAAAAAAAAAATTCAAATAATTCAATA
* *
8404 ATTTAAATAAAAACTGTCAAATAATTCAATA
1 ATTTAAAAAAAAAAT-TCAAATAATTCAATA
8435 ATT
1 ATT
8438 ATTTTATAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (30 bp):
ATTTAAAAAAAAAATTCAAATAATTCAATA
Found at i:20096 original size:2 final size:2
Alignment explanation
Indices: 20085--20118 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
20075 ACTAAGAGCC
20085 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20119 TCTTAGTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20769 original size:18 final size:20
Alignment explanation
Indices: 20726--20770 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
20716 ACATAAACCC
*
20726 AAAA-AATAATTATAAAAGA
1 AAAACAATAATTATAAAACA
20745 AATAACAATAA-TA-AAAACA
1 AA-AACAATAATTATAAAACA
20764 AAAACAA
1 AAAACAA
20771 AAGACGTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 9 0.39
20 4 0.17
21 5 0.22
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAACAATAATTATAAAACA
Found at i:21131 original size:7 final size:7
Alignment explanation
Indices: 21119--21147 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
21109 TGTAAGCCAT
21119 GGAAAGA
1 GGAAAGA
21126 GGAAAGA
1 GGAAAGA
21133 GGAAAGA
1 GGAAAGA
21140 GGAAAGA
1 GGAAAGA
21147 G
1 G
21148 CATCTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (7 bp):
GGAAAGA
Found at i:22749 original size:29 final size:29
Alignment explanation
Indices: 22658--22752 Score: 95
Period size: 29 Copynumber: 3.2 Consensus size: 29
22648 AAATACTTAC
* *
22658 ATAAGGGTTAAACTTTTCAAAA-TATCAA
1 ATAAGGGTAAAACTTTTCAAAATTGTCAA
* * **
22686 ATAAAGGTTAAACCTTTTTGAAATTGCTCAA
1 AT-AAGGGTAAAACTTTTCAAAATTG-TCAA
22717 ATAAGGGTCAAAAC-TTTCAAAATTGTCAA
1 ATAAGGGT-AAAACTTTTCAAAATTGTCAA
22746 ATAAGGG
1 ATAAGGG
22753 CCCAACATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
28 2 0.04
29 26 0.49
30 15 0.28
31 10 0.19
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.31
Consensus pattern (29 bp):
ATAAGGGTAAAACTTTTCAAAATTGTCAA
Found at i:32272 original size:31 final size:31
Alignment explanation
Indices: 32201--32275 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
32191 GATGTTTAGT
* * * * *
32201 TTAGATTCTAAATTGAATATTGAAGCCAAAC
1 TTAGATACCAAATTGAACATTGAAGACAAAA
32232 TTAGATACCAAATTGAACATTGAA-ACAAAA
1 TTAGATACCAAATTGAACATTGAAGACAAAA
*
32262 TATAGGTACCAAAT
1 T-TAGATACCAAAT
32276 AGTATATAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
30 5 0.14
31 32 0.86
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (31 bp):
TTAGATACCAAATTGAACATTGAAGACAAAA
Found at i:43379 original size:31 final size:31
Alignment explanation
Indices: 43344--43414 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
43334 TTAGATTAAG
* *
43344 ATTAAAATTTCAA-AATTTAAAAAGTATAAAA
1 ATTAAAATTT-AACAATTTAAAAAATACAAAA
43375 ATTAAAA-TTAACCAATTTAAAAAATACAAAA
1 ATTAAAATTTAA-CAATTTAAAAAATACAAAA
43406 ATTAAAATT
1 ATTAAAATT
43415 AATCAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 2 0.06
30 2 0.06
31 30 0.86
32 1 0.03
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (31 bp):
ATTAAAATTTAACAATTTAAAAAATACAAAA
Found at i:43415 original size:31 final size:31
Alignment explanation
Indices: 43357--43425 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
43347 AAAATTTCAA
* *
43357 AATTTAAAAAGTATAAAAATTAAAATTAACC
1 AATTTAAAAAATACAAAAATTAAAATTAACC
*
43388 AATTTAAAAAATACAAAAATTAAAATTAATC
1 AATTTAAAAAATACAAAAATTAAAATTAACC
*
43419 AAATTAA
1 AATTTAA
43426 TCTACAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.64, C:0.06, G:0.01, T:0.29
Consensus pattern (31 bp):
AATTTAAAAAATACAAAAATTAAAATTAACC
Found at i:57972 original size:60 final size:60
Alignment explanation
Indices: 57879--57995 Score: 225
Period size: 60 Copynumber: 1.9 Consensus size: 60
57869 ACTCTTTACC
57879 TTTTTAATAAGGAAAGCCATTTGGTTTTGTTTAGCATTTTCTATAATGTTCCAAAATTTG
1 TTTTTAATAAGGAAAGCCATTTGGTTTTGTTTAGCATTTTCTATAATGTTCCAAAATTTG
*
57939 TTTTTAATAAGGAAAGCCATTTGGTTTTGTTTAGCATTTTCTATAATGTTTCAAAAT
1 TTTTTAATAAGGAAAGCCATTTGGTTTTGTTTAGCATTTTCTATAATGTTCCAAAAT
57996 CCAGGACAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (60 bp):
TTTTTAATAAGGAAAGCCATTTGGTTTTGTTTAGCATTTTCTATAATGTTCCAAAATTTG
Found at i:65434 original size:42 final size:43
Alignment explanation
Indices: 65352--65433 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
65342 TGGGTGTTTG
65352 CCATGCCATGGCTGACACCCACTTTTTTAAATTTAAAAAACAT
1 CCATGCCATGGCTGACACCCACTTTTTTAAATTTAAAAAACAT
65395 CCATGCCATGGCTGACACCCACTTTTTTAAATTTAAAAA
1 CCATGCCATGGCTGACACCCACTTTTTTAAATTTAAAAA
65434 CCATTTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (43 bp):
CCATGCCATGGCTGACACCCACTTTTTTAAATTTAAAAAACAT
Found at i:65611 original size:58 final size:57
Alignment explanation
Indices: 65494--65785 Score: 202
Period size: 58 Copynumber: 5.1 Consensus size: 57
65484 AATAAAATTT
* * *
65494 TTTTTTGGGTGTTTGCCAAGCCAT-GACCGACACCCCTTTTATCAGAT---AAAAAATA
1 TTTTTTGGGTGTTTGTCAAGCCATGGA-CGACACCCATTTT-CCAGATAAAAAAAAATA
* * * * * *
65549 TTTTTTAGGTGTTTGTTAAGTCATGGTCGACACCTCATTTTCCAGATACAAAAAAATT
1 TTTTTTGGGTGTTTGTCAAGCCATGGACGACACC-CATTTTCCAGATAAAAAAAAATA
* * * * * * * *
65607 TTTTTTGAGTTTTTGTCAAACCATGGCCAACACCCCTTTTTCCAAATATAAAAAAATATT
1 TTTTTTGGGTGTTTGTCAAGCCATGGACGACA-CCCATTTTCCAGATA-AAAAAAA-ATA
* * * * *
65667 TTTTTTGGGTGTCTGTTAAGCCAT-AACTGACACCCCTTTTTCAGATTAAAAAAAAATA
1 TTTTTTGGGTGTTTGTCAAGCCATGGAC-GACACCCATTTTCCAGA-TAAAAAAAAATA
* * * * * *
65725 TTTTTTGGGTGTTTGTCAAGTCAT-AACCGACACCCTTTTTTCAAATAAAAAATAAT-
1 TTTTTTGGGTGTTTGTCAAGCCATGGA-CGACACCCATTTTCCAGATAAAAAAAAATA
65781 TTTTT
1 TTTTT
65786 GGTGTCTGCG
Statistics
Matches: 189, Mismatches: 37, Indels: 21
0.77 0.15 0.09
Matches are distributed among these distances:
55 32 0.17
56 11 0.06
57 10 0.05
58 82 0.43
59 27 0.14
60 27 0.14
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (57 bp):
TTTTTTGGGTGTTTGTCAAGCCATGGACGACACCCATTTTCCAGATAAAAAAAAATA
Found at i:66745 original size:18 final size:19
Alignment explanation
Indices: 66701--66749 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
66691 AAATGTAGGG
66701 AAATAAT-TATTATTGAAA
1 AAATAATATATTATTGAAA
*
66719 AATTAA-ATATATATTGAAA
1 AAATAATATAT-TATTGAAA
66738 AAATAATA-ATTA
1 AAATAATATATTA
66750 GAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 10 0.38
19 15 0.58
20 1 0.04
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (19 bp):
AAATAATATATTATTGAAA
Found at i:66785 original size:30 final size:30
Alignment explanation
Indices: 66745--66836 Score: 130
Period size: 30 Copynumber: 3.1 Consensus size: 30
66735 AAAAAATAAT
* *
66745 AATTAGAAATTAAATTTAAAATATGAACGA
1 AATTACAAATTAAATTTAAAATATAAACGA
* *
66775 AATTACAAATTAAATTTAAAATAAAAAGGA
1 AATTACAAATTAAATTTAAAATATAAACGA
* *
66805 AATTATAAATTAAATTTAAAAAATAAACGA
1 AATTACAAATTAAATTTAAAATATAAACGA
66835 AA
1 AA
66837 AAAATAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (30 bp):
AATTACAAATTAAATTTAAAATATAAACGA
Found at i:76742 original size:6 final size:6
Alignment explanation
Indices: 76731--76759 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
76721 GCCACCACTT
76731 CCAAAC CCAAAC CCAAAC CCAAAC CCAAA
1 CCAAAC CCAAAC CCAAAC CCAAAC CCAAA
76760 TCCACTCCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (6 bp):
CCAAAC
Found at i:79177 original size:12 final size:12
Alignment explanation
Indices: 79156--79187 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
79146 TGGGCGTTTC
79156 CCGCCACCGCCT
1 CCGCCACCGCCT
*
79168 CCGCCTCCGCCT
1 CCGCCACCGCCT
79180 CCGCCACC
1 CCGCCACC
79188 ACATCGTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.69, G:0.16, T:0.09
Consensus pattern (12 bp):
CCGCCACCGCCT
Found at i:80754 original size:21 final size:21
Alignment explanation
Indices: 80716--80756 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80706 AAAACTTTTA
*
80716 AAATTTTGAAGAGTTTAATGG
1 AAATTTTGAAGAGATTAATGG
* *
80737 AAATTTTTATGAGATTAATG
1 AAATTTTGAAGAGATTAATG
80757 AAAACTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (21 bp):
AAATTTTGAAGAGATTAATGG
Found at i:89634 original size:10 final size:9
Alignment explanation
Indices: 89612--89653 Score: 52
Period size: 8 Copynumber: 4.8 Consensus size: 9
89602 GTAATCATTT
89612 AAAATT-TA
1 AAAATTATA
89620 AAAATTATCA
1 AAAATTAT-A
89630 AAAATTAT-
1 AAAATTATA
*
89638 AAAATTAAA
1 AAAATTATA
89647 AAAATTA
1 AAAATTA
89654 AGTGATGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 13 0.43
9 8 0.27
10 9 0.30
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAATTATA
Found at i:91341 original size:16 final size:15
Alignment explanation
Indices: 91304--91347 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
91294 TATTTTTGTG
*
91304 ATTTTTTAAAATTAA
1 ATTTATTAAAATTAA
91319 A-TTATTAAAATATAA
1 ATTTATTAAAAT-TAA
91334 ATTTATTAATAATT
1 ATTTATTAA-AATT
91348 TAATGAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.36
15 5 0.20
16 8 0.32
17 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTTATTAAAATTAA
Found at i:98389 original size:19 final size:19
Alignment explanation
Indices: 98345--98389 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
98335 ATATTTTAAA
* *
98345 TAATAAATATAGTTATATAG
1 TAAT-AATACAGTTATACAG
*
98365 TTATAATACAGTTATACAG
1 TAATAATACAGTTATACAG
98384 TAATAA
1 TAATAA
98390 AGCATTTGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (19 bp):
TAATAATACAGTTATACAG
Found at i:113462 original size:2 final size:2
Alignment explanation
Indices: 113455--113482 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
113445 TATAAGTTGA
113455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113483 GTATTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113555 original size:19 final size:18
Alignment explanation
Indices: 113533--113582 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
113523 AAATGGAAAT
113533 AAATATATAAAAATTCAGA
1 AAATATATAAAAATTCA-A
*
113552 AAATATAT-AAAATTTAA
1 AAATATATAAAAATTCAA
*
113569 AAATTTATAAAAAT
1 AAATATATAAAAAT
113583 AAAATAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 8 0.29
18 12 0.43
19 8 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AAATATATAAAAATTCAA
Found at i:113571 original size:17 final size:18
Alignment explanation
Indices: 113533--113580 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
113523 AAATGGAAAT
113533 AAATATATAAAAATTCAGA
1 AAATATAT-AAAATTCAGA
*
113552 AAATATATAAAATTTA-A
1 AAATATATAAAATTCAGA
*
113569 AAATTTATAAAA
1 AAATATATAAAA
113581 ATAAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 12 0.44
18 7 0.26
19 8 0.30
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATATATAAAATTCAGA
Found at i:117486 original size:29 final size:29
Alignment explanation
Indices: 117436--117635 Score: 183
Period size: 29 Copynumber: 6.8 Consensus size: 29
117426 TGGAGGTCCT
*
117436 TAAACTATCCAAAAATTACATTTTTA-CCG
1 TAAACT-TCCAAAAATTACATTTTTACCCC
* * *
117465 TCGAACTTCCAAAAATTCCATTTTGACCCC
1 T-AAACTTCCAAAAATTACATTTTTACCCC
*** * *
117495 TAAACTATTTGATAGTTACA-TTTTACCCC
1 TAAACT-TCCAAAAATTACATTTTTACCCC
117524 TAAACTTCCAAAAATTACATTTTTACCCC
1 TAAACTTCCAAAAATTACATTTTTACCCC
*
117553 AAAACTTCCAAAAATTACATTTTT--CCC
1 TAAACTTCCAAAAATTACATTTTTACCCC
* **
117580 TCAAACTTCCAAAAATTTCATTTTTGAACTCGA
1 T-AAACTTCCAAAAATTACATTTTT--AC-CCC
*
117613 AAAACTTCCAAAAATTACATTTT
1 TAAACTTCCAAAAATTACATTTT
117636 ATGAGTCCTT
Statistics
Matches: 137, Mismatches: 24, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.02
28 30 0.22
29 68 0.50
30 14 0.10
32 21 0.15
33 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.35
Consensus pattern (29 bp):
TAAACTTCCAAAAATTACATTTTTACCCC
Found at i:121059 original size:15 final size:16
Alignment explanation
Indices: 121039--121073 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
121029 AGAACTCAAC
121039 AAATATTTTTCT-TTT
1 AAATATTTTTCTGTTT
*
121054 AAATATTTTTTTGTTT
1 AAATATTTTTCTGTTT
121070 AAAT
1 AAAT
121074 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
AAATATTTTTCTGTTT
Done.