genome.fa.s14551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014551.1 Kokia drynarioides strain JFW-HI SEQ_129590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184219

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1347--1416	28	2.4	28	80	4	77	51	4	0	44	1.21
1808--2041	114	2.1	114	91	0	380	36	22	11	29	1.90
3405--3443	15	2.4	17	87	8	55	35	15	0	48	1.45
7518--7548	16	1.9	16	100	0	62	70	6	9	12	1.31
9714--9830	22	5.3	22	67	4	83	35	9	17	37	1.83
9710--9840	44	3.0	44	93	0	208	37	8	17	36	1.80
16958--17130	44	3.9	44	86	0	229	36	8	16	38	1.79
17001--17068	12	6.0	12	75	13	54	35	5	17	41	1.74
17005--17111	22	4.9	22	75	6	110	34	8	17	39	1.80
20604--20653	20	2.5	20	80	9	57	46	0	16	38	1.47
22500--22546	21	2.2	21	84	0	58	29	14	23	31	1.95
27845--27894	20	2.5	20	80	9	57	46	0	16	38	1.47
28327--28452	62	2.0	62	95	0	225	39	3	18	38	1.66
29715--29777	21	3.0	20	72	9	54	28	15	20	34	1.94
33458--33511	21	2.5	22	73	8	58	27	14	25	31	1.95
38174--38225	21	2.5	21	81	6	61	28	13	26	30	1.94
46539--46584	18	2.6	18	92	0	74	45	10	32	10	1.74
52687--52739	26	2.0	26	92	0	88	28	22	22	26	1.99
52733--52809	37	2.1	37	85	0	100	32	16	22	28	1.96
52817--52924	37	2.9	37	85	0	144	23	16	30	29	1.96
55014--55058	11	3.9	12	88	8	58	28	31	0	40	1.57
55014--55057	23	2.0	22	86	4	61	29	31	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55218--55278	19	3.2	19	79	6	61	21	4	0	73	1.01
64274--64306	11	2.8	12	90	4	50	30	0	12	57	1.35
67377--67521	78	1.9	78	97	0	272	38	13	12	35	1.82
68557--68758	69	2.9	69	85	3	273	32	9	16	41	1.82
68557--68758	68	2.9	68	84	5	271	32	9	16	41	1.82
68949--69269	110	2.9	109	80	3	331	28	20	16	33	1.95
76913--76950	19	2.0	19	89	0	58	47	10	26	15	1.78
82766--82825	29	2.1	29	90	6	95	56	0	0	43	0.99
83152--83255	29	3.4	31	72	16	108	23	18	13	45	1.84
83117--83286	60	2.8	61	86	3	227	22	16	11	48	1.78
83517--83575	31	1.9	31	86	6	84	42	11	20	25	1.86
86554--86614	22	2.8	22	87	0	95	9	16	27	45	1.79
86604--86673	25	2.8	24	89	4	77	12	31	18	37	1.89
90201--90241	21	1.9	22	95	5	75	29	0	12	58	1.34
92338--92372	16	2.2	16	89	0	52	37	5	5	51	1.50
97427--97465	19	2.0	20	85	5	53	66	0	28	5	1.12
98287--98343	21	2.8	20	79	10	62	31	1	3	63	1.22
98317--98350	10	3.5	10	92	4	52	32	0	0	67	0.91
98527--98560	13	2.6	13	90	0	50	61	5	0	32	1.20
111536--111607	23	3.3	22	79	11	76	45	1	2	50	1.25
115827--115947	63	1.9	63	100	0	242	28	36	14	20	1.92
125853--125934	39	2.1	39	90	9	130	29	2	9	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126856--127075	92	2.4	94	90	2	345	35	21	8	34	1.84
128296--128340	23	2.0	23	86	0	63	42	13	6	37	1.70
131785--131824	21	1.9	21	84	0	53	40	5	42	12	1.64
135711--135771	20	3.0	20	97	0	113	32	14	18	34	1.91
136452--136499	25	1.9	25	82	0	60	12	8	22	56	1.63
140443--140494	25	2.1	25	85	7	70	9	5	21	63	1.45
141690--141759	25	2.8	25	97	0	131	14	11	20	54	1.70
143807--143877	19	3.8	18	70	17	56	67	2	2	26	1.18
144087--144129	19	2.3	19	88	4	61	37	0	2	60	1.10
144099--144161	15	3.9	15	81	16	56	23	1	3	71	1.09
144157--144210	19	2.9	19	73	18	51	18	3	5	72	1.20
144520--144569	24	2.1	23	82	10	57	46	2	0	52	1.12
145129--145237	54	2.0	54	98	0	209	26	38	8	26	1.84
146805--146874	32	2.3	29	80	7	77	34	12	14	38	1.84
146814--147080	93	2.9	91	78	7	272	35	13	11	38	1.81
147843--147879	19	1.9	19	94	0	65	72	2	5	18	1.15
148327--148365	12	3.3	12	85	7	62	76	0	7	15	0.99
148507--148575	29	2.4	29	85	2	86	28	1	15	53	1.51
148754--148840	30	2.8	30	73	13	79	52	3	10	33	1.52
149312--149413	53	1.9	53	95	0	186	31	18	11	38	1.87
149421--149454	16	2.1	16	88	0	50	35	14	14	35	1.87
154803--154831	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154797--154841	12	4.0	12	86	8	51	53	4	0	42	1.21
165095--165138	17	2.6	17	81	0	52	13	13	11	61	1.57
168465--168492	2	14.0	2	100	0	56	50	50	0	0	1.00
170857--170944	34	2.6	34	88	0	131	37	32	11	18	1.86
176754--176826	20	3.7	19	75	3	65	56	2	5	35	1.37
176766--176859	20	4.8	19	76	13	93	58	1	4	36	1.25
176811--176868	10	5.8	10	76	8	64	63	0	3	32	1.11
176766--176859	39	2.4	38	79	10	100	58	1	4	36	1.25
178252--178300	19	2.6	19	75	12	64	59	0	4	36	1.17
178624--178650	9	3.0	9	100	0	54	33	0	0	66	0.92
178565--178653	10	8.6	10	71	14	56	34	1	1	62	1.10
180568--180640	8	8.5	8	72	21	51	68	2	0	28	1.03
180605--180703	40	2.5	39	81	15	114	59	2	3	35	1.24
181073--181281	93	2.3	88	80	10	224	34	10	17	37	1.84
181386--181410	7	3.6	7	100	0	50	0	0	12	88	0.53
182465--182720	90	2.9	87	76	10	252	38	17	12	31	1.87
182894--182950	10	5.9	9	73	15	51	61	1	1	35	1.17
182895--182951	19	2.9	19	79	7	60	61	1	1	35	1.17
183335--183508	90	1.9	89	86	9	246	32	8	20	38	1.83
183344--183530	90	2.1	91	81	7	213	36	9	17	37	1.81

Tables:   1

The End!