Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014553.1 Kokia drynarioides strain JFW-HI SEQ_129592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6648
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:5705 original size:19 final size:19

Alignment explanation


    Indices: 5671--5710  Score: 55
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       5661 TAATTAAAAA

                               
       5671 TAAAAAAAAGAAAACA-AT
          1 TAAAAAAAAGAAAACAGAT

                     *          
       5689 TAAAAAAAATAACAACAGAT
          1 TAAAAAAAAGAA-AACAGAT

              
       5709 TA
          1 TA

       5711 GTAAATATTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  18   11  0.58
  19    4  0.21
  20    4  0.21

ACGTcount: A:0.72, C:0.07, G:0.05, T:0.15


Consensus pattern (19 bp):   
TAAAAAAAAGAAAACAGAT
Done.