genome.fa.s14560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014560.1 Kokia drynarioides strain JFW-HI SEQ_129599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106957

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41--91	19	2.6	20	81	12	61	37	0	7	54	1.29
3191--3253	24	2.7	24	72	2	56	22	7	3	66	1.32
3236--3274	13	3.1	12	82	10	51	23	2	2	71	1.10
3367--3411	21	2.1	22	83	4	56	28	4	6	60	1.42
14301--14355	28	2.0	27	82	10	67	61	3	1	32	1.24
17983--18094	56	2.0	56	98	0	215	13	14	13	58	1.63
21053--21081	9	3.0	10	90	10	51	79	0	20	0	0.74
22021--22504	45	10.9	45	78	7	400	33	21	16	27	1.95
22021--22502	90	5.4	89	78	8	471	33	21	17	27	1.96
22022--22501	133	3.6	131	79	6	461	33	21	17	27	1.95
24438--24503	29	2.2	31	79	17	77	19	16	6	57	1.60
24523--24559	19	1.9	19	88	0	56	24	13	0	62	1.31
26967--26997	11	2.8	11	90	0	53	9	35	16	38	1.81
27048--27122	38	2.0	38	89	0	114	45	5	5	44	1.49
27735--27783	18	2.7	17	84	9	53	46	0	2	51	1.12
27751--27835	44	1.9	44	92	0	143	41	8	3	47	1.51
30717--30803	18	4.7	18	76	16	72	70	0	0	29	0.88
30716--30803	8	9.5	10	69	27	61	70	0	0	29	0.88
30698--30795	28	3.8	26	75	22	82	69	0	0	30	0.89
30687--30769	38	2.2	36	81	12	96	66	0	0	33	0.92
30684--30797	47	2.4	47	82	5	140	68	0	0	31	0.90
30708--30803	9	10.4	9	71	16	63	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30754--30794	14	3.0	13	89	10	64	75	0	0	24	0.80
33026--33066	18	2.4	17	87	4	55	53	2	9	34	1.47
33034--33071	16	2.2	18	90	9	62	47	0	7	44	1.32
33563--33595	15	2.2	15	89	10	50	48	6	3	42	1.43
35014--35061	17	2.8	17	90	0	60	33	27	20	18	1.96
37477--37541	20	3.0	22	84	13	91	35	10	16	36	1.84
40537--40601	20	3.0	22	84	13	91	35	10	16	36	1.84
41399--41583	44	4.3	44	86	4	243	36	12	25	24	1.91
41399--41583	87	2.1	85	85	4	237	36	12	25	24	1.91
42303--42352	24	2.1	24	92	0	82	26	18	24	32	1.97
42307--42361	24	2.5	22	85	8	67	27	18	25	29	1.98
44939--45006	22	3.0	22	79	8	66	42	16	25	16	1.87
47776--47809	14	2.3	15	90	5	52	82	0	0	17	0.67
48443--48480	20	1.9	20	84	10	51	60	2	26	10	1.43
53504--53531	2	14.0	2	100	0	56	50	0	0	50	1.00
53866--53984	23	5.4	23	69	18	92	44	17	23	14	1.85
66887--67097	106	2.0	105	99	0	404	20	28	22	27	1.99
74153--74620	29	15.8	29	75	17	348	30	2	30	36	1.70
74155--74600	59	7.5	59	80	13	358	31	2	30	35	1.70
74188--74514	148	2.2	148	87	6	463	31	1	31	35	1.68
74216--74624	59	6.9	58	82	7	366	30	2	30	36	1.70
75670--75751	3	26.3	3	73	9	58	35	2	6	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75703--75776	33	2.2	33	85	4	96	40	2	5	51	1.39
76457--76547	6	15.5	6	69	17	66	57	2	2	38	1.23
76457--76547	17	5.2	17	81	15	96	57	2	2	38	1.23
76466--76547	37	2.3	35	89	8	121	57	2	2	37	1.25
77530--77583	20	2.6	21	80	16	60	48	0	9	42	1.35
80492--80614	29	4.2	28	79	5	111	35	4	27	32	1.76
80616--80762	30	5.0	29	78	11	113	32	3	29	34	1.74
80539--80690	77	2.0	76	83	3	189	32	5	31	30	1.81
80710--80869	30	5.3	30	91	0	203	39	0	23	36	1.55
80684--80888	30	6.8	30	83	5	200	39	0	22	38	1.54
80710--80889	90	2.0	90	83	4	229	38	0	23	37	1.55
81994--82030	11	3.5	11	78	14	51	43	0	0	56	0.99
81992--82032	20	2.0	21	95	4	75	43	0	0	56	0.99
82844--82898	21	2.7	20	80	8	65	29	16	23	30	1.96
83934--83993	29	2.1	29	100	0	120	46	13	13	26	1.80
88121--88164	20	2.1	21	83	4	54	56	0	6	36	1.26
90867--90893	3	9.0	3	100	0	54	0	33	0	66	0.92
91352--91396	18	2.5	18	85	7	56	40	8	15	35	1.79

Tables:   1

The End!