genome.fa.s14566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014566.1 Kokia drynarioides strain JFW-HI SEQ_129605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  309119

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3509--3554	21	2.1	21	92	4	74	6	21	6	65	1.39
18022--18069	22	2.2	22	85	7	62	33	14	8	43	1.75
26217--26263	21	2.2	21	88	0	67	57	10	29	2	1.44
30010--30104	47	2.0	47	97	0	181	50	6	20	23	1.70
36018--36084	30	2.2	30	97	0	125	38	23	5	31	1.79
48744--48779	18	2.0	18	100	0	72	55	5	11	27	1.57
64347--64404	26	2.2	26	84	0	71	58	12	10	18	1.61
68444--68601	82	1.9	82	98	0	307	24	28	19	27	1.99
69535--69566	14	2.2	15	94	5	57	81	0	6	12	0.87
80549--80600	18	2.8	18	80	11	52	17	7	1	73	1.16
90952--90999	18	2.7	17	87	9	69	14	22	29	33	1.94
104423--104480	28	2.1	28	84	9	75	34	5	10	50	1.59
104443--104481	13	2.8	13	88	7	51	38	2	10	48	1.51
113053--113095	21	2.0	21	81	9	50	20	20	2	55	1.54
113063--113104	21	2.0	22	85	4	59	14	19	2	64	1.39
125657--125690	17	2.0	17	100	0	68	23	11	23	41	1.87
132801--132847	20	2.3	21	85	3	60	10	10	4	74	1.20
147772--147804	17	1.9	17	93	0	57	24	0	9	66	1.20
153814--153841	2	14.0	2	100	0	56	0	50	0	50	1.00
163018--163062	24	1.9	23	86	13	65	42	0	46	11	1.39
171830--171881	27	1.9	27	81	14	63	11	9	1	76	1.09
175094--175120	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175565--175595	15	2.1	15	93	0	53	0	16	0	83	0.64
176184--176222	17	2.3	17	86	0	51	51	15	12	20	1.76
180991--181141	81	1.9	81	88	0	230	39	8	3	48	1.53
189141--189204	33	2.0	33	84	3	85	37	3	18	40	1.67
212194--212436	132	1.8	132	87	1	362	23	19	22	34	1.96
216747--217071	30	11.1	29	75	7	244	34	24	2	38	1.69
216767--217062	117	2.5	116	81	6	328	34	25	2	38	1.69
216838--217040	89	2.3	88	83	6	243	35	21	2	40	1.67
216830--217059	88	2.6	89	79	9	265	35	21	2	40	1.67
217288--217328	19	2.2	19	86	8	57	26	14	9	48	1.75
224487--224537	25	2.0	25	100	0	102	56	23	0	19	1.42
229045--229715	39	17.2	39	69	10	352	24	30	19	24	1.98
229045--229741	78	8.9	78	81	5	728	24	30	20	24	1.98
230142--230179	16	2.3	17	90	4	60	42	2	2	52	1.29
231878--232474	29	20.2	29	76	11	477	36	26	2	34	1.68
231878--232474	59	10.1	59	77	10	510	36	26	2	34	1.68
231878--232474	205	2.9	204	82	7	606	36	26	2	34	1.68
246266--246328	31	2.0	31	81	0	72	44	14	4	36	1.66
246715--246800	26	3.1	27	73	17	79	34	1	1	62	1.10
246736--246769	16	2.1	16	88	5	50	41	0	0	58	0.98
249422--249473	13	3.9	13	76	2	50	17	5	36	40	1.73
263028--263266	52	4.6	52	86	2	329	35	23	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265049--265082	16	2.2	16	89	5	52	44	14	0	41	1.45
265841--265877	11	3.4	11	88	0	56	8	10	51	29	1.65
267545--267628	42	2.0	42	95	0	150	38	9	14	38	1.78
267958--267994	7	5.3	7	100	0	74	13	56	0	29	1.37
272358--272393	3	12.0	3	88	11	56	30	2	0	66	1.06
279857--279889	17	1.9	17	88	11	50	42	0	0	57	0.98
281064--281099	15	2.4	15	95	0	63	38	13	16	30	1.88
298765--298810	21	2.2	21	84	7	58	60	6	8	23	1.49
300170--300202	17	1.9	17	88	11	50	42	0	6	51	1.26
300480--300531	15	3.5	15	70	0	50	36	0	1	61	1.07
300656--300697	20	2.2	20	86	4	59	14	2	4	78	1.01
305828--305878	20	2.5	20	87	3	75	41	3	11	43	1.60
308226--308277	12	4.2	12	87	2	50	44	0	55	0	0.99
308226--308283	18	3.2	18	85	2	71	44	0	53	1	1.10
308228--308260	6	5.5	6	100	0	66	36	0	63	0	0.95
308401--308427	14	1.9	14	100	0	54	55	14	0	29	1.40

Tables:   1

The End!