Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014567.1 Kokia drynarioides strain JFW-HI SEQ_129606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6194
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:244 original size:23 final size:23

Alignment explanation


    Indices: 213--260  Score: 87
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        203 ATGCATCAAG

                *                  
        213 TCACCTTCCTCCGAAATTAAGCT
          1 TCACATTCCTCCGAAATTAAGCT

                                   
        236 TCACATTCCTCCGAAATTAAGCT
          1 TCACATTCCTCCGAAATTAAGCT

              
        259 TC
          1 TC

        261 CATGGCAACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.27, C:0.33, G:0.08, T:0.31


Consensus pattern (23 bp):   
TCACATTCCTCCGAAATTAAGCT

Found at i:2272 original size:21 final size:21

Alignment explanation


    Indices: 2248--2293  Score: 74
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       2238 TGTGTGCTCA

                  *              
       2248 CATTTATAGAAGGATACTACT
          1 CATTTAAAGAAGGATACTACT

                       *         
       2269 CATTTAAAGAATGATACTACT
          1 CATTTAAAGAAGGATACTACT

                
       2290 CATT
          1 CATT

       2294 GTTGGATATG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35


Consensus pattern (21 bp):   
CATTTAAAGAAGGATACTACT
Done.