Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014569.1 Kokia drynarioides strain JFW-HI SEQ_129608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1874
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38


Found at i:768 original size:25 final size:24

Alignment explanation


    Indices: 723--769  Score: 58
    Period size: 25  Copynumber: 1.9  Consensus size: 24

        713 TTCCTTGTTA

                          * *       
        723 ATTGTCAAATATATTTTTATATTT
          1 ATTGTCAAATATATATATATATTT

                    *              
        747 ATTGTTCATATATATATATATAT
          1 ATTG-TCAAATATATATATATAT

        770 ATAATTATCA


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  24    4  0.21
  25   15  0.79

ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55


Consensus pattern (24 bp):   
ATTGTCAAATATATATATATATTT
Done.