genome.fa.s14572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014572.1 Kokia drynarioides strain JFW-HI SEQ_129611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46920

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329--361	10	3.2	11	87	12	52	0	39	0	60	0.97
332--362	15	2.0	16	93	6	55	0	38	0	61	0.96
5007--5124	23	5.0	23	78	11	123	11	27	22	39	1.87
5003--5150	48	3.2	45	84	8	174	13	28	20	37	1.90
5009--5146	23	5.8	24	77	13	117	12	29	21	36	1.90
6276--6357	41	2.0	41	100	0	164	17	17	19	46	1.85
6722--6858	72	1.9	72	84	3	186	23	14	24	37	1.92
6730--6886	72	2.2	72	79	7	185	25	17	22	35	1.95
6871--6900	14	2.1	14	100	0	60	26	23	23	26	2.00
8549--8583	3	11.7	3	100	0	70	68	0	31	0	0.90
9338--9384	6	8.2	6	81	9	62	42	0	2	55	1.12
9310--9384	34	2.2	34	92	0	123	40	0	4	56	1.18
9328--9382	11	4.9	11	78	12	58	40	0	3	56	1.17
9310--9384	17	4.4	17	84	5	107	40	0	4	56	1.18
9998--10046	3	16.0	3	80	4	53	61	2	2	34	1.19
11152--11255	30	3.5	28	77	14	102	38	18	1	41	1.61
11152--11527	29	12.8	29	71	15	181	34	22	2	40	1.67
11162--11556	58	6.8	56	73	10	233	34	23	2	40	1.67
11156--11556	87	4.6	86	77	7	346	34	22	2	40	1.67
11475--11644	59	2.9	59	81	5	184	31	23	4	40	1.75
11631--11694	30	2.2	29	86	8	85	37	28	7	26	1.84
11630--11692	29	2.2	28	81	13	74	36	30	7	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11699--11771	33	2.2	33	100	0	146	31	15	16	36	1.90
21328--21363	18	2.0	18	94	0	63	19	11	11	58	1.62
21805--22178	49	7.6	48	68	15	165	39	20	25	15	1.91
21803--22582	99	7.9	99	82	4	899	40	20	23	15	1.90
21810--22569	198	3.8	198	90	0	1128	40	20	24	15	1.90
22431--22579	49	3.0	49	77	11	160	41	18	23	16	1.90
23254--23351	17	5.4	17	76	17	99	39	0	4	56	1.19
23282--23351	6	12.2	6	79	8	83	41	0	2	55	1.14
23272--23348	11	6.8	11	80	11	50	38	0	3	57	1.17
23282--23351	23	3.0	23	85	4	88	41	0	2	55	1.14
23961--24034	3	24.3	3	84	2	94	62	1	2	33	1.18
25099--25199	30	3.4	30	80	8	98	33	25	2	37	1.71
25197--25302	30	3.6	29	74	11	99	33	24	2	39	1.70
25099--25446	29	11.9	28	70	12	177	34	25	2	37	1.69
25227--25542	29	10.9	29	69	14	138	33	25	1	38	1.67
25183--25542	58	6.2	58	74	11	229	33	25	1	38	1.67
25227--25506	86	3.2	87	81	6	336	33	25	1	38	1.67
25181--25446	57	4.6	56	72	13	157	34	25	1	38	1.67
25402--25541	60	2.4	58	83	9	176	32	24	2	40	1.67
33430--33471	17	2.5	17	96	0	75	42	14	9	33	1.78
41935--42086	49	3.1	49	70	10	128	18	27	18	35	1.94
41832--42066	100	2.3	100	83	1	292	19	26	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45284--45319	18	2.0	18	100	0	72	38	11	27	22	1.88

Tables:   1

The End!