Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014575.1 Kokia drynarioides strain JFW-HI SEQ_129614, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3090
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2658 original size:6 final size:6

Alignment explanation


    Indices: 2598--2655  Score: 89
    Period size: 6  Copynumber: 9.7  Consensus size: 6

       2588 TATTTATTAA

                               *      *                            
       2598 ATAAAT ATAAAT ATAAAC ATAAAC ATAAAT ATAAAT ATAAAT ATAAAT
          1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT

                *      
       2646 ATAATT ATAA
          1 ATAAAT ATAA

       2656 TTACTTTCTG


Statistics
Matches: 49,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   49  1.00

ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31


Consensus pattern (6 bp):   
ATAAAT
Done.