genome.fa.s14579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014579.1 Kokia drynarioides strain JFW-HI SEQ_129618, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  224217

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3138--3176	6	6.5	6	87	0	51	23	30	0	46	1.53
7082--7120	6	6.5	6	87	0	51	23	30	0	46	1.53
11555--11608	23	2.3	23	83	0	72	24	16	25	33	1.96
17709--17766	23	2.5	23	86	10	91	24	20	24	31	1.98
18518--18599	29	2.8	29	82	8	87	39	18	4	37	1.72
24031--24078	23	2.0	24	84	4	62	58	8	8	25	1.55
24105--24136	13	2.5	13	100	0	64	25	9	0	65	1.22
29751--29821	25	2.8	25	86	2	97	18	18	28	35	1.94
31491--31554	26	2.5	26	89	0	92	23	20	28	28	1.99
35481--35624	72	2.0	72	90	5	229	40	18	13	27	1.88
35650--35691	22	1.9	22	90	0	66	21	30	16	30	1.95
37903--37959	29	2.0	29	85	0	78	33	24	15	26	1.95
46718--46784	28	2.4	28	90	2	100	40	20	22	16	1.91
46883--47064	29	6.6	29	72	13	134	38	24	10	26	1.88
46882--47002	29	4.3	29	83	4	149	38	23	12	24	1.90
46882--47004	57	2.2	56	86	1	165	39	23	13	24	1.90
47172--47275	55	1.9	55	91	0	172	27	25	13	33	1.93
51848--51886	21	1.9	21	89	5	62	69	5	17	7	1.32
55460--55502	18	2.4	18	88	7	61	16	32	9	41	1.80
56932--57134	106	1.9	105	91	5	329	52	4	3	39	1.38
57038--57317	150	1.8	153	89	6	446	53	4	3	38	1.39
57209--57256	19	2.5	20	75	21	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77085--77109	12	2.1	12	100	0	50	0	32	0	68	0.90
84624--84656	17	1.9	17	88	11	50	54	0	15	30	1.41
90783--90868	23	3.7	23	77	0	82	27	24	16	31	1.96
92068--92282	108	2.0	108	86	3	299	41	13	12	32	1.83
92824--92868	24	2.0	24	82	8	58	64	11	11	13	1.50
93860--93911	14	3.5	15	78	14	54	7	0	38	53	1.30
94297--94991	43	16.3	43	83	2	724	29	14	24	31	1.95
94339--94991	85	7.7	85	82	4	692	28	14	24	31	1.95
94278--95000	170	4.3	172	82	3	795	28	15	23	31	1.95
96000--96080	7	11.4	7	71	21	62	1	19	0	79	0.81
96002--96080	33	2.5	31	85	8	97	1	20	0	78	0.82
96003--96069	26	2.9	23	79	16	75	1	22	0	76	0.87
96000--96080	17	4.6	17	76	13	83	1	19	0	79	0.81
102258--102299	20	2.1	20	100	0	84	54	4	7	33	1.49
102287--102502	108	2.0	109	91	4	357	43	13	11	31	1.80
102779--102848	35	1.9	35	88	5	104	68	1	15	14	1.28
102779--102848	36	1.9	37	88	2	106	68	1	15	14	1.28
104066--104172	6	17.3	6	70	12	74	6	1	41	50	1.39
104080--104170	33	2.9	30	79	17	89	7	2	41	48	1.44
104804--104852	21	2.4	20	80	10	55	71	2	8	18	1.21
105177--105225	21	2.5	20	90	6	73	36	4	0	59	1.17
105161--105252	19	4.8	19	79	9	89	30	2	1	66	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109207--109312	53	2.0	53	92	0	176	43	16	9	30	1.80
110267--110305	17	2.3	17	86	8	53	17	12	23	46	1.83
111377--111417	20	2.0	20	100	0	82	31	4	24	39	1.76
117964--117998	2	17.5	2	93	0	61	54	0	45	0	0.99
121919--121958	2	20.0	2	100	0	80	50	0	0	50	1.00
123814--123838	12	2.1	12	100	0	50	84	0	0	16	0.63
124343--124525	97	1.9	97	87	3	271	40	15	16	27	1.88
124815--125230	30	14.2	29	77	9	305	38	2	23	35	1.67
124815--125230	29	14.2	28	77	10	302	38	2	23	35	1.67
124960--125258	88	3.4	88	82	5	311	38	2	24	35	1.67
124786--125258	30	16.2	30	78	7	269	38	2	24	34	1.69
125047--125267	118	1.9	116	83	4	291	38	2	23	35	1.68
126874--126933	17	3.7	16	72	12	59	58	8	1	31	1.38
126876--126933	16	3.6	16	76	2	62	58	8	1	31	1.38
127386--127945	78	7.2	77	79	4	496	26	18	30	24	1.98
127386--128335	39	24.4	39	66	11	300	26	18	30	24	1.98
127436--127945	234	2.2	234	84	2	657	25	18	30	24	1.98
127922--128339	78	5.4	77	81	4	451	26	18	30	23	1.98
127880--128298	156	2.7	156	82	3	416	26	19	30	23	1.98
139799--140216	30	14.2	29	76	12	250	37	2	24	36	1.69
139935--140194	89	2.9	89	83	5	319	38	2	23	35	1.67
141077--141103	14	1.9	14	100	0	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141748--141797	17	2.9	17	78	0	64	58	10	2	30	1.42
143200--143229	13	2.3	13	94	0	51	3	20	3	73	1.12
144010--144315	45	7.1	45	80	9	302	25	17	24	32	1.97
144221--144353	38	3.4	38	77	10	144	27	15	27	29	1.96
144544--144595	24	2.2	24	92	0	86	30	15	21	32	1.94
145290--145349	12	4.8	12	80	15	61	5	13	0	81	0.84
146244--146285	17	2.4	18	84	15	61	0	14	2	83	0.75
151825--151873	24	2.0	24	96	0	89	14	14	32	38	1.86
154367--154415	24	2.0	24	96	0	89	36	16	26	20	1.93
158539--158592	27	2.0	27	100	0	108	40	11	11	37	1.76
159416--159472	21	2.7	21	81	13	64	33	28	14	24	1.94
159438--159482	21	2.1	21	83	0	54	33	26	13	26	1.93
160385--160636	102	2.5	102	86	1	326	26	21	26	26	1.99
160962--161222	133	2.0	133	95	1	470	37	18	6	36	1.78
164357--164398	20	2.2	19	83	12	50	38	16	2	42	1.61
167082--167131	21	2.4	21	82	0	55	32	26	12	30	1.92
168975--169016	20	2.2	19	83	12	50	38	16	2	42	1.61
171058--171207	34	4.5	34	81	2	135	33	35	12	18	1.89
191830--191894	15	4.3	15	75	9	51	36	16	13	32	1.89
193316--193351	18	2.0	18	100	0	72	44	16	0	38	1.48
197287--197395	52	2.1	52	98	0	209	34	11	22	31	1.89
209390--209446	30	1.9	29	92	3	96	33	21	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209976--210014	20	2.0	19	90	5	60	58	0	38	2	1.12
212943--212967	10	2.5	10	100	0	50	16	0	36	48	1.46
213736--213827	7	13.1	7	78	8	98	26	22	18	32	1.97
213736--213861	14	9.1	14	81	1	128	23	23	19	33	1.97
220905--220939	7	5.0	7	92	0	52	20	28	22	28	1.98
223262--223299	20	1.9	19	89	5	58	57	2	39	0	1.12
223952--224042	41	2.2	41	84	0	119	35	20	25	18	1.96

Tables:   1

The End!