genome.fa.s14583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014583.1 Kokia drynarioides strain JFW-HI SEQ_129622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  323357

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15239--15291	5	10.2	5	76	8	52	41	0	3	54	1.18
15239--15284	16	2.9	16	81	9	58	41	0	4	54	1.20
16462--16488	2	13.5	2	100	0	54	51	0	0	48	1.00
38172--38246	21	3.6	21	76	7	64	29	14	25	30	1.95
41451--41482	5	6.4	5	100	0	64	0	40	0	59	0.97
46951--47027	41	1.9	40	86	7	111	42	11	5	40	1.64
48121--48185	31	2.2	31	88	5	98	43	9	10	36	1.72
50651--50841	96	2.0	96	81	8	228	38	14	18	28	1.91
51140--51300	29	5.6	29	69	11	71	32	4	27	34	1.78
51107--51305	58	3.4	58	76	7	163	33	4	29	33	1.78
51200--51546	29	11.9	28	75	12	247	30	5	28	35	1.79
51235--51388	59	2.6	58	83	6	177	33	1	26	37	1.68
51142--51541	88	4.6	85	74	12	255	31	5	28	35	1.79
53325--53414	17	5.1	17	77	9	65	50	4	3	42	1.39
53340--53405	6	11.2	6	73	9	55	53	3	3	40	1.32
53340--53414	17	4.2	18	83	5	82	53	2	2	41	1.29
57603--57774	9	18.4	9	67	19	86	32	1	4	62	1.22
57593--57751	19	8.4	18	67	18	74	33	0	3	62	1.13
57645--57723	28	2.9	28	76	12	83	34	0	2	63	1.08
57640--57733	46	2.0	46	83	4	118	35	0	2	62	1.07
57624--57748	38	3.4	35	75	17	85	35	0	3	61	1.12
61549--61620	35	2.1	35	100	0	144	30	19	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62274--62310	17	2.2	17	90	0	56	16	13	24	45	1.83
62302--62397	41	2.3	41	82	3	122	34	5	23	36	1.78
75846--75874	3	9.7	3	100	0	58	34	0	31	34	1.58
78723--78755	2	17.0	2	93	6	59	0	51	0	48	1.00
87146--87251	38	2.8	38	76	11	110	46	1	2	49	1.27
87154--87273	39	3.1	36	70	20	93	45	0	3	50	1.24
87254--87316	21	2.9	21	81	13	58	52	0	4	42	1.22
87305--87357	27	2.0	27	88	0	79	47	3	3	45	1.39
88416--88494	28	2.8	28	84	3	106	30	7	27	34	1.85
88504--88644	29	4.9	30	81	7	159	36	2	26	34	1.69
88510--88680	57	3.0	57	76	10	177	35	3	26	35	1.74
89514--89547	3	11.3	3	87	12	52	29	2	0	67	1.05
89723--89786	11	6.0	10	74	18	58	31	3	3	62	1.26
90442--90523	6	14.5	6	74	16	61	57	2	0	40	1.12
90442--90523	22	3.7	22	81	4	94	57	2	0	40	1.12
90476--90526	16	3.2	16	81	8	52	56	3	0	39	1.18
92274--92298	5	5.0	5	100	0	50	40	0	20	40	1.52
95572--95618	13	3.2	14	77	17	51	40	0	2	57	1.11
99261--99298	14	2.7	14	87	0	58	26	13	2	57	1.49
99275--99333	28	2.1	28	87	0	82	25	15	6	52	1.67
99302--99352	21	2.4	21	86	0	66	27	13	3	54	1.56
110134--110163	15	1.9	16	93	6	53	56	3	0	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110639--110685	14	3.4	14	74	11	51	63	4	0	31	1.13
118175--118277	51	2.0	51	96	0	188	54	2	10	32	1.50
126862--126928	31	2.2	31	86	0	89	34	5	10	49	1.62
132080--132144	17	3.6	18	80	12	78	38	3	4	53	1.37
132436--132488	25	2.1	25	82	6	63	20	45	13	20	1.84
132949--132997	3	16.0	3	82	4	53	57	4	0	38	1.18
134016--134251	30	8.0	29	80	7	253	34	29	2	33	1.71
134016--134347	29	11.3	30	74	11	258	33	30	4	32	1.78
134016--134243	59	3.8	58	84	5	278	35	29	2	32	1.72
136634--136681	23	2.1	23	88	7	71	52	6	0	41	1.27
136636--136681	22	2.0	23	87	4	67	52	6	0	41	1.27
137177--137201	5	5.0	5	100	0	50	0	0	40	60	0.97
141098--141164	28	2.4	29	75	7	75	46	8	4	40	1.56
162780--162805	9	2.9	9	100	0	52	80	0	0	19	0.71
165776--165813	8	4.8	8	81	12	51	60	0	0	39	0.97
166174--166230	30	2.0	27	86	10	78	49	0	0	50	1.00
166672--166731	31	2.0	30	83	3	75	40	0	3	56	1.16
167442--167466	13	1.9	13	100	0	50	92	8	0	0	0.40
169514--169574	29	2.1	29	100	0	122	29	19	14	36	1.92
170136--170211	38	2.0	38	92	0	125	18	21	6	53	1.66
174575--174611	19	1.9	19	88	0	56	59	0	13	27	1.35
174577--174623	19	2.5	19	79	6	51	65	0	10	23	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181976--182182	22	9.9	20	80	8	209	6	6	21	65	1.39
182026--182182	10	15.1	11	63	18	59	8	7	20	64	1.44
181976--182191	64	3.4	64	96	1	393	6	6	20	65	1.39
181977--182191	42	5.1	42	79	9	206	6	6	20	65	1.40
188773--189195	192	2.2	192	88	1	607	29	19	24	26	1.98
192543--192589	18	2.6	18	83	12	69	29	25	27	17	1.97
196859--196899	7	6.0	7	78	16	50	31	17	24	26	1.97
196859--196896	20	1.9	20	94	0	67	34	18	21	26	1.96
196844--196899	27	2.1	27	93	0	94	33	17	25	23	1.96
198626--198679	21	2.7	21	78	13	51	46	0	5	48	1.25
213735--213775	21	1.9	22	90	5	66	78	0	12	9	0.98
213730--213776	21	2.2	20	82	10	58	74	0	14	10	1.07
217796--217836	10	3.9	10	81	12	55	24	7	0	68	1.15
219881--219980	49	2.0	49	100	0	200	30	16	26	28	1.96
231729--231760	16	1.9	17	93	6	57	50	3	0	46	1.17
234859--234914	21	2.6	23	76	21	66	30	7	8	53	1.59
234859--234914	20	2.6	23	71	23	59	30	7	8	53	1.59
238088--238241	78	2.0	78	98	0	299	47	13	3	35	1.59
238903--238942	15	2.6	16	84	7	57	37	5	5	52	1.45
254276--254340	29	2.2	30	83	5	78	30	9	15	44	1.78
254295--254354	29	2.1	29	80	0	66	31	6	13	48	1.68
254481--254568	31	2.9	30	74	15	83	42	13	9	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259572--259621	25	2.0	25	100	0	100	28	12	4	56	1.54
262603--262638	12	2.8	12	91	8	54	44	8	0	47	1.33
266754--266815	31	2.0	31	90	3	99	40	17	11	30	1.85
266903--266974	30	2.4	31	85	2	92	47	18	13	20	1.82
268739--268780	16	2.7	16	85	3	50	57	0	4	38	1.20
274463--274514	26	2.1	23	82	10	59	61	0	0	38	0.96
284622--284647	13	2.0	13	100	0	52	46	15	7	30	1.74
289247--289271	12	2.1	12	100	0	50	40	0	40	20	1.52
290901--290943	10	4.3	10	79	8	52	30	0	2	67	1.03
302596--302660	18	3.7	18	74	14	64	56	0	1	41	1.08
303115--303146	13	2.4	14	94	5	57	12	15	0	71	1.14
303115--303146	7	4.7	7	92	7	57	12	15	0	71	1.14
307752--307811	24	2.6	24	79	12	72	61	1	0	36	1.06
309736--309803	33	2.1	33	94	0	118	27	14	17	39	1.89
312050--312411	195	1.9	193	85	3	505	25	25	19	29	1.98
312883--312914	16	2.0	16	93	0	55	25	18	3	53	1.59
315182--315222	21	2.0	21	90	0	64	34	0	2	63	1.08
318898--318933	2	18.0	2	100	0	72	50	50	0	0	1.00
322688--322748	11	5.3	11	81	11	59	72	0	26	1	0.94
322699--322741	4	10.8	4	85	9	61	76	0	23	0	0.78
322699--322740	21	2.0	21	90	9	68	76	0	23	0	0.79
322743--322775	9	3.7	9	91	0	57	54	0	45	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322805--322844	16	2.5	16	100	0	80	40	0	0	60	0.97
323137--323179	21	2.1	21	86	4	61	25	2	13	58	1.48

Tables:   1

The End!