Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014587.1 Kokia drynarioides strain JFW-HI SEQ_129626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4950
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:2290 original size:22 final size:22

Alignment explanation


    Indices: 2265--2308  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2255 TTCATTCAAA

                                  
       2265 CAAAAATAAAATCTTCAAAGTT
          1 CAAAAATAAAATCTTCAAAGTT

                                  
       2287 CAAAAATAAAATCTTCAAAGTT
          1 CAAAAATAAAATCTTCAAAGTT

       2309 AATCTAATAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27


Consensus pattern (22 bp):   
CAAAAATAAAATCTTCAAAGTT

Found at i:2363 original size:16 final size:15

Alignment explanation


    Indices: 2342--2373  Score: 55
    Period size: 16  Copynumber: 2.1  Consensus size: 15

       2332 CTTTAACACA

                            
       2342 AATCTAATCTAATAAT
          1 AATCTAATCTAA-AAT

                           
       2358 AATCTAATCTAAAAT
          1 AATCTAATCTAAAAT

             
       2373 A
          1 A

       2374 TAAATAATAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    4  0.25
  16   12  0.75

ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34


Consensus pattern (15 bp):   
AATCTAATCTAAAAT

Found at i:2693 original size:16 final size:18

Alignment explanation


    Indices: 2654--2699  Score: 64
    Period size: 16  Copynumber: 2.8  Consensus size: 18

       2644 AATGGGATGA

                              
       2654 AAATAAATTT--TTAATT
          1 AAATAAATTTAATTAATT

                              
       2670 AAATAAATTTAATTAATT
          1 AAATAAATTTAATTAATT

                          
       2688 -AA-AAATTTAATT
          1 AAATAAATTTAATT

       2700 CATTTTAGGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
  16   20  0.71
  17    2  0.07
  18    6  0.21

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (18 bp):   
AAATAAATTTAATTAATT
Done.