Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014588.1 Kokia drynarioides strain JFW-HI SEQ_129627, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12779
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3982 original size:23 final size:23

Alignment explanation


    Indices: 3956--4001  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3946 ATTATTGAAC

                    *              
       3956 CCCGACACTTGAGTTAAAACCTT
          1 CCCGACACGTGAGTTAAAACCTT

                                   
       3979 CCCGACACGTGAGTTAAAACCTT
          1 CCCGACACGTGAGTTAAAACCTT

       4002 TGTCAGTACA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24


Consensus pattern (23 bp):   
CCCGACACGTGAGTTAAAACCTT

Found at i:10120 original size:19 final size:19

Alignment explanation


    Indices: 10096--10135  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

      10086 TGTGGTGGCC

                               
      10096 ATGCGATGCTTCACACCAT
          1 ATGCGATGCTTCACACCAT

                               
      10115 ATGCGATGCTTCACACCAT
          1 ATGCGATGCTTCACACCAT

              
      10134 AT
          1 AT

      10136 CTTTTCAATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28


Consensus pattern (19 bp):   
ATGCGATGCTTCACACCAT
Done.