Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014593.1 Kokia drynarioides strain JFW-HI SEQ_129632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20212
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33


Found at i:20173 original size:18 final size:18

Alignment explanation


    Indices: 20147--20181  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      20137 AATGATATAT

                *       *     
      20147 TAATTAATAATATTATTA
          1 TAATAAATAATAATATTA

                             
      20165 TAATAAATAATAATATT
          1 TAATAAATAATAATATT

      20182 TTATTATTTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (18 bp):   
TAATAAATAATAATATTA
Done.