genome.fa.s14594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014594.1 Kokia drynarioides strain JFW-HI SEQ_129633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161971

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8382--9934	162	9.6	162	94	0	2635	33	19	21	26	1.97
11223--11271	23	2.2	22	85	3	62	42	2	0	55	1.11
24852--24897	23	2.0	23	83	12	58	41	6	2	50	1.40
27572--27780	100	2.1	103	87	4	309	57	7	5	29	1.49
27572--27806	100	2.3	100	82	8	264	57	6	4	31	1.46
27769--27800	16	1.9	17	93	6	57	59	0	0	40	0.97
28920--28954	16	2.1	18	89	10	56	71	5	5	17	1.25
35434--35509	12	6.8	11	69	19	50	52	1	1	44	1.17
36573--36611	19	2.1	19	100	0	78	15	5	20	58	1.55
36758--36799	16	2.6	16	96	0	75	76	11	9	2	1.12
39550--39619	25	2.8	24	89	6	97	4	18	1	75	1.04
39559--39617	31	1.9	31	86	6	84	5	16	1	76	1.05
55265--55321	28	2.0	28	100	0	114	40	24	0	35	1.56
55793--55836	21	2.1	21	86	0	61	52	29	0	18	1.46
55859--55948	13	6.8	13	73	15	51	30	5	24	40	1.78
55863--56050	7	27.4	7	72	10	93	25	4	26	44	1.72
55999--56085	28	3.1	27	79	9	77	18	5	34	41	1.74
56047--56099	7	7.6	7	78	0	61	16	11	39	32	1.85
56040--56101	14	4.4	14	83	0	79	19	9	37	33	1.84
57373--57449	35	2.3	34	84	8	95	44	37	1	16	1.57
57627--57702	20	3.8	20	89	3	116	25	25	15	34	1.95
73588--73622	6	5.8	6	96	0	61	48	0	37	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74960--74993	17	1.9	18	88	5	52	44	0	5	50	1.26
82344--82372	14	2.1	14	93	6	51	0	51	0	48	1.00
90658--90731	37	2.0	37	100	0	148	35	5	8	51	1.55
95017--95062	23	2.2	20	88	11	65	45	8	0	45	1.34
103608--103691	38	2.2	38	82	4	98	33	22	20	23	1.97
103719--103770	26	2.0	26	84	0	68	25	17	25	32	1.97
105996--106037	21	2.0	21	86	4	59	69	2	28	0	1.01
118801--118880	11	6.7	11	69	19	54	47	2	8	41	1.48
118816--119053	88	2.7	88	86	4	318	50	2	8	38	1.45
118983--119053	11	6.2	12	77	9	60	49	0	8	42	1.33
119014--119070	28	2.1	27	83	9	71	47	0	14	38	1.44
119403--119475	19	3.9	19	72	12	62	52	4	0	43	1.20
119427--119467	21	2.1	20	82	13	50	39	2	0	58	1.11
122020--122086	17	3.9	17	84	0	89	46	11	20	20	1.82
122019--122084	34	1.9	34	90	0	105	46	12	19	21	1.82
122127--122159	13	2.8	12	90	9	50	72	12	0	15	1.12
125512--125554	9	4.8	9	97	0	77	13	30	34	20	1.92
125568--125613	22	2.1	22	91	0	74	19	19	43	17	1.88
125548--125605	11	5.3	11	87	0	89	17	17	44	20	1.86
125548--125613	33	2.0	33	84	0	87	18	18	43	19	1.88
125822--125849	6	4.7	6	100	0	56	14	0	0	85	0.59
126833--126897	20	3.2	20	100	0	130	26	15	13	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131505--131569	5	12.8	5	75	18	55	72	3	4	20	1.16
131515--131573	26	2.2	25	82	8	73	72	1	5	20	1.12
134301--134338	20	1.9	19	89	5	58	44	0	2	52	1.14
134335--134368	11	3.2	11	87	4	52	14	0	2	82	0.79
134328--134371	18	2.4	19	80	3	54	25	0	2	72	0.96
134484--134556	31	2.4	32	86	6	98	42	4	1	52	1.29
138530--138664	58	2.3	58	86	6	175	25	15	19	39	1.91
138558--138683	59	2.2	57	81	11	148	32	12	15	39	1.85
142652--142894	22	10.5	22	82	7	261	12	23	22	41	1.88
143580--143604	13	1.9	13	100	0	50	52	0	0	48	1.00
145877--146002	23	5.4	25	84	8	99	11	23	19	45	1.83
145897--146049	69	2.2	66	85	11	191	11	22	20	45	1.83
147618--147673	6	9.0	6	84	5	67	60	1	3	33	1.24
147620--147678	19	3.1	19	76	13	59	57	1	5	35	1.31
158309--158343	14	2.5	14	85	0	52	65	11	2	20	1.37
158621--158659	20	1.9	21	94	5	71	43	0	2	53	1.14
160332--160564	51	4.7	51	80	8	277	29	22	14	33	1.93
160401--160539	44	3.0	46	86	8	174	30	21	13	33	1.92

Tables:   1

The End!