Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014595.1 Kokia drynarioides strain JFW-HI SEQ_129634, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2402
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33


Found at i:46 original size:32 final size:32

Alignment explanation


    Indices: 1--169  Score: 241
    Period size: 32  Copynumber: 5.3  Consensus size: 32

                             **   *          
          1 AGAGCTAATCAATCAGTGCATAATATGCTCGTA
          1 AGAGCT-ATCAATCAGTAAATAGTATGCTCGTA

                                        *   
         34 AGAGCTATCAATCAGTAAA-AGTATGCTTGTA
          1 AGAGCTATCAATCAGTAAATAGTATGCTCGTA

                *          *      *         
         65 AGAGTTATCAATCAGCAAATAGCATGCTCGTA
          1 AGAGCTATCAATCAGTAAATAGTATGCTCGTA

                          *    *            
         97 AGAGCTATCAATCAATAAACAGTATGCTCGTA
          1 AGAGCTATCAATCAGTAAATAGTATGCTCGTA

                                            
        129 AGAGCTATCAATCAGTAAATAGTATGCTCGTA
          1 AGAGCTATCAATCAGTAAATAGTATGCTCGTA

                     
        161 AGAGCTATC
          1 AGAGCTATC

        170 CAACCTACAC


Statistics
Matches: 120,  Mismatches: 15, Indels: 3
        0.87            0.11        0.02

Matches are distributed among these distances:
  31   27  0.22
  32   87  0.73
  33    6  0.05

ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27


Consensus pattern (32 bp):   
AGAGCTATCAATCAGTAAATAGTATGCTCGTA

Done.