genome.fa.s14597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014597.1 Kokia drynarioides strain JFW-HI SEQ_129636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198912

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1545--1613	36	1.9	36	87	0	102	37	23	13	26	1.91
1708--1885	23	7.7	23	86	0	248	47	14	3	34	1.62
4853--4990	28	4.9	28	83	1	152	31	21	19	27	1.97
4843--5022	84	2.1	84	82	2	209	33	20	18	27	1.96
7538--7684	73	2.0	73	98	0	285	29	14	14	40	1.86
9846--9906	30	2.0	30	100	0	122	47	6	26	19	1.74
21517--21633	62	1.9	61	85	1	162	28	2	10	58	1.44
22668--22702	17	2.0	17	88	5	52	60	0	0	40	0.97
23546--23592	20	2.4	20	89	3	78	38	2	4	55	1.31
24602--24626	11	2.3	11	100	0	50	44	0	0	56	0.99
25362--25386	7	3.6	7	100	0	50	88	12	0	0	0.53
28852--28886	17	2.1	18	89	10	56	28	0	0	71	0.86
39436--39523	43	2.0	43	93	0	149	52	5	11	30	1.60
40897--40959	32	1.9	33	83	3	83	36	9	9	44	1.70
42960--43036	33	2.3	33	88	0	109	42	19	3	33	1.69
43660--43714	27	2.0	27	100	0	110	10	10	18	60	1.59
44353--44904	187	2.9	187	88	2	815	24	11	20	43	1.85
50324--50391	19	3.9	18	71	17	54	64	0	1	33	1.02
50338--50392	19	2.8	19	76	17	60	63	0	1	34	1.05
50752--50851	41	2.4	40	77	6	101	18	20	14	48	1.82
51676--51705	10	3.0	10	90	0	51	16	0	0	83	0.65
55240--55269	10	3.1	10	95	4	53	10	6	0	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56933--56995	29	2.1	29	85	5	81	44	1	31	22	1.62
58750--58810	23	2.7	24	80	12	67	52	0	0	47	1.00
58768--58811	22	2.0	23	90	4	72	47	0	0	52	1.00
59958--60000	22	2.0	22	85	0	59	53	2	0	44	1.13
63885--63980	47	2.0	47	100	0	192	35	23	12	28	1.91
74243--74429	93	2.0	93	100	0	374	23	20	16	40	1.91
84114--84236	24	5.1	24	86	0	165	27	24	21	26	1.99
84114--84236	48	2.6	48	90	0	183	27	24	21	26	1.99
92616--92698	29	2.8	29	80	7	78	45	6	6	42	1.53
93265--93301	19	1.9	19	88	0	56	56	0	5	37	1.22
99791--99846	24	2.3	24	90	0	85	19	37	23	19	1.94
102653--102724	30	2.5	28	80	8	74	51	2	2	43	1.30
125217--125250	14	2.4	14	90	0	50	70	0	0	29	0.87
137584--137709	38	3.3	37	70	18	105	28	18	19	34	1.95
137608--138072	42	11.6	41	76	10	410	27	17	24	30	1.97
137608--138072	82	5.8	81	82	8	499	27	17	24	30	1.97
138191--138618	196	2.2	196	85	3	558	21	28	16	34	1.94
138191--138618	98	4.4	98	82	4	488	21	28	16	34	1.94
138192--138623	49	8.8	49	74	5	273	21	28	15	34	1.94
139010--139321	112	2.9	105	79	10	326	39	10	20	30	1.85
139641--139672	10	3.1	10	91	8	55	0	18	0	81	0.70
139635--139672	14	2.8	14	81	18	53	0	18	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139637--139669	11	3.2	11	87	12	52	0	18	0	81	0.68
140147--140206	27	2.2	28	81	6	77	25	18	3	53	1.60
140564--140614	6	8.2	6	85	14	68	0	17	0	82	0.67
149248--149287	20	2.0	20	85	0	53	22	30	0	47	1.52
149430--149509	23	3.7	22	78	8	83	31	0	0	68	0.90
149436--149509	21	3.4	22	77	9	89	32	0	0	67	0.91
149460--149506	10	4.6	10	78	10	51	34	0	0	65	0.93
149436--149509	12	6.8	12	70	26	58	32	0	0	67	0.91
149460--149534	29	2.5	31	78	20	81	34	1	0	64	1.02
151892--151939	23	2.3	22	86	13	66	62	0	4	33	1.14
151882--152743	141	6.2	139	83	11	984	53	4	4	37	1.41
151882--152743	144	6.2	141	86	8	1071	53	4	4	37	1.41
151882--152743	285	3.1	281	85	9	1096	53	4	4	37	1.41
152460--152509	22	2.3	22	79	6	57	62	2	0	36	1.07
152603--152627	8	3.1	8	100	0	50	60	0	0	40	0.97
155651--155679	5	6.0	5	96	4	51	0	17	0	82	0.66
193126--193154	5	6.0	5	92	8	51	0	0	17	82	0.66
198257--198292	18	2.1	18	89	5	56	33	25	0	41	1.55
198754--198797	2	22.5	2	95	4	81	47	0	0	52	1.00

Tables:   1

The End!