genome.fa.s14598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014598.1 Kokia drynarioides strain JFW-HI SEQ_129637, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17977

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117--211	48	2.0	48	87	0	136	14	7	42	35	1.74
130--288	84	1.9	84	89	3	250	13	8	42	34	1.76
655--754	46	2.2	46	92	3	166	29	1	12	58	1.41
1927--2026	29	3.5	27	79	14	112	33	4	29	34	1.76
1946--2150	29	7.0	30	70	15	135	35	4	26	33	1.77
1927--2204	57	4.8	59	83	8	297	35	4	25	33	1.77
1950--2175	117	1.9	117	85	7	318	36	3	26	33	1.75
2109--2204	29	3.3	29	70	17	76	34	4	26	35	1.76
3966--4060	17	5.5	17	76	1	91	53	7	3	35	1.45
3969--4060	34	2.7	34	79	0	112	54	7	3	34	1.45
6605--6665	32	1.9	32	86	0	86	26	8	11	54	1.64
6982--7032	27	2.0	26	84	7	68	21	5	11	60	1.52
7039--7142	51	2.0	51	84	0	136	31	2	9	55	1.47
9130--9328	30	6.7	29	82	7	204	38	2	23	35	1.69
9130--9328	60	3.3	58	83	6	229	38	2	23	35	1.69
9137--9305	90	1.9	90	87	4	252	39	2	23	33	1.70
9137--9328	90	2.1	90	84	4	246	38	2	23	34	1.69
11483--11983	49	10.2	49	73	8	365	20	23	17	38	1.93
11438--11983	98	5.6	97	85	3	655	20	24	17	38	1.93
14064--14102	10	3.9	11	87	12	50	0	30	0	69	0.89
15361--15545	96	1.9	96	89	6	286	36	14	18	30	1.91
15837--15957	57	2.1	58	83	4	156	43	11	20	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15837--15985	58	2.6	56	79	5	172	43	10	20	24	1.84
15973--16181	30	7.1	30	71	15	134	36	3	23	36	1.72
15989--16173	59	3.2	58	82	10	182	36	2	23	37	1.69
17166--17344	23	7.8	23	70	13	118	43	21	22	12	1.86

Tables:   1

The End!