Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014606.1 Kokia drynarioides strain JFW-HI SEQ_129645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2512
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33


Found at i:1077 original size:3 final size:3

Alignment explanation


    Indices: 1069--1103  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

       1059 CTTCCCAGCT

                                              *           
       1069 ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATC AT
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT

       1104 TAAGCTTAAT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37


Consensus pattern (3 bp):   
ATC

Done.