genome.fa.s14607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014607.1 Kokia drynarioides strain JFW-HI SEQ_129646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74927

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462--1496	18	1.9	18	88	11	54	31	0	0	68	0.90
1969--2008	21	1.9	21	85	10	55	42	5	7	45	1.54
2685--2715	16	1.9	16	93	0	53	54	9	0	35	1.33
3288--3334	21	2.2	21	80	0	58	27	0	19	53	1.45
4578--4628	21	2.4	21	90	0	75	47	31	7	13	1.72
4641--4682	11	3.8	11	80	0	57	16	33	28	21	1.95
5788--5821	14	2.4	14	90	0	50	26	0	5	67	1.13
11733--11773	21	2.0	21	95	0	73	43	26	9	19	1.82
11795--11844	11	4.5	11	82	0	64	16	30	28	26	1.96
11795--11844	22	2.3	22	92	0	82	16	30	28	26	1.96
12936--12969	14	2.4	14	90	0	50	26	0	5	67	1.13
15533--15583	25	2.0	25	96	0	93	33	7	13	45	1.73
16247--16300	25	2.1	25	82	3	63	72	9	1	16	1.19
16320--16361	15	2.8	15	82	10	50	73	7	2	16	1.15
17090--17311	43	5.2	43	78	6	166	27	14	24	33	1.94
17090--17910	42	19.9	43	71	13	353	25	15	25	33	1.95
17090--17460	81	4.4	87	79	7	274	26	15	25	33	1.95
17160--17989	81	10.2	81	80	8	360	25	14	25	33	1.95
17287--17748	201	2.3	201	84	3	579	25	15	26	33	1.95
17243--17989	162	4.6	161	81	8	652	25	15	26	33	1.95
17488--17965	243	2.0	243	89	0	733	25	15	25	34	1.95
18213--18613	49	8.3	49	66	14	145	19	19	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18213--18557	144	2.4	139	81	8	356	19	19	18	42	1.89
18388--18636	98	2.6	98	78	6	265	20	22	16	40	1.91
18383--18669	49	5.9	49	73	6	210	19	21	17	41	1.90
19755--19789	13	2.8	12	87	8	52	0	14	0	85	0.59
19730--19789	31	1.9	31	86	6	86	0	18	1	80	0.80
21983--22019	4	9.2	4	100	0	74	0	24	0	75	0.80
44831--44879	24	1.9	27	88	12	77	61	0	2	36	1.08
49755--49864	52	2.1	52	86	3	150	44	6	20	28	1.76
50423--50452	14	2.1	15	93	6	53	76	3	6	13	1.11
51761--51805	23	2.0	23	90	0	72	48	6	20	24	1.73
53471--53539	33	2.1	34	83	8	88	63	14	0	21	1.30
54083--54138	28	2.0	29	82	10	71	51	3	5	39	1.42
54711--54802	45	2.0	45	91	0	148	33	18	18	29	1.95
55510--55543	17	2.0	17	94	0	59	44	0	2	52	1.16
56005--56077	33	2.2	33	82	2	83	57	1	4	36	1.26
59092--59209	30	3.9	30	71	10	87	52	1	2	43	1.25
71220--71263	18	2.5	18	85	3	63	70	0	2	27	0.99

Tables:   1

The End!