Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001461.1 Kokia drynarioides strain JFW-HI SEQ_112982, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1343
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:1299 original size:96 final size:96

Alignment explanation


    Indices: 1120--1306  Score: 218
    Period size: 96  Copynumber: 1.9  Consensus size: 96

       1110 GTGAAAATGA

                *                     *                      *          *   *
       1120 TATTTGATTATCTCGATTTGAAGAAAGGTTACACCTAGTAAGTTAAGACGCAACATTTCGGAATT
          1 TATTCGATTATCTCGATTTGAAGAAAAGTTACACCTAGTAAGTTAAGACACAACATTTCGAAATC

                    *                      
       1185 GAAGATAAGGAAACATTGCCTCGATTAGGGG
         66 GAAGATAAAGAAACATTGCCTCGATTAGGGG

                       *               *  *        *       *                 
       1216 TATTCGATTATTTCGATTTGAAGAAAATTTGCACCTAGTGAGTTAAGGCACAA-ATTTTCGAAAC
          1 TATTCGATTATCTCGATTTGAAGAAAAGTTACACCTAGTAAGTTAAGACACAACA-TTTCGAAA-

                            *            
       1280 TCGAA-ATAAA-AGAATATTGCCTCGATT
         64 TCGAAGATAAAGA-AACATTGCCTCGATT

       1307 TTAAAGCTTT


Statistics
Matches: 76,  Mismatches: 12, Indels: 6
        0.81            0.13        0.06

Matches are distributed among these distances:
  95    2  0.03
  96   70  0.92
  97    4  0.05

ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31


Consensus pattern (96 bp):   
TATTCGATTATCTCGATTTGAAGAAAAGTTACACCTAGTAAGTTAAGACACAACATTTCGAAATC
GAAGATAAAGAAACATTGCCTCGATTAGGGG
Done.