genome.fa.s14610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014610.1 Kokia drynarioides strain JFW-HI SEQ_129649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51404

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651--1885	51	4.6	51	83	3	271	29	22	14	34	1.93
12362--12425	17	3.7	17	80	12	85	37	1	7	53	1.40
12355--12426	35	2.1	35	92	5	121	36	1	9	52	1.43
12828--12893	12	5.6	12	73	10	64	56	3	3	37	1.30
12828--12872	3	14.7	3	81	4	54	60	2	2	35	1.22
14037--14554	58	8.9	58	79	6	484	32	26	2	38	1.71
14013--14609	29	20.5	28	66	14	169	33	25	3	38	1.73
14536--14671	59	2.3	59	83	0	164	36	22	5	35	1.78
21758--21800	18	2.3	19	80	4	52	58	2	34	4	1.32
25248--25282	18	1.9	18	94	0	61	20	11	14	54	1.70
25697--26209	98	5.3	97	81	7	501	39	18	25	16	1.91
25709--26070	147	2.5	147	82	6	416	38	18	26	16	1.92
25816--26176	194	1.9	194	87	4	532	38	19	25	16	1.92
25697--26121	49	8.7	49	75	12	367	38	19	26	16	1.92
26628--26694	35	1.9	34	93	3	116	35	1	10	52	1.45
26630--26693	17	3.7	17	76	12	76	35	1	9	53	1.43
28580--28649	30	2.5	27	76	6	68	32	20	5	41	1.75
28619--29158	59	9.2	58	79	7	456	32	24	4	38	1.76
28629--29016	29	13.3	28	65	21	131	32	24	3	39	1.73
28936--29164	29	7.9	27	68	17	97	30	28	5	35	1.80
29115--29176	28	2.2	28	82	0	70	32	32	8	27	1.86
32785--32950	51	3.3	50	87	3	215	29	22	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40588--40653	34	1.9	34	84	6	89	19	19	13	46	1.83
40596--40653	17	3.4	17	75	0	53	20	17	13	48	1.81
44011--44446	33	13.2	33	77	3	387	25	45	3	25	1.69
44118--44446	99	3.3	98	85	5	430	25	44	2	27	1.66
47661--47702	20	2.1	20	90	0	66	50	7	7	35	1.57
47670--47726	20	2.8	20	89	5	80	47	10	8	33	1.69

Tables:   1

The End!