genome.fa.s14617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014617.1 Kokia drynarioides strain JFW-HI SEQ_129656, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  303807

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4150--4203	21	2.6	21	75	16	58	31	22	14	31	1.94
4124--4203	42	1.9	42	84	5	108	28	21	17	32	1.96
6597--6677	37	2.2	37	93	0	135	27	23	22	27	1.99
16375--16416	20	2.1	20	82	8	50	59	2	4	33	1.31
22594--22661	35	2.1	30	84	13	82	8	17	2	70	1.25
30508--30549	15	2.8	16	85	7	52	28	23	7	40	1.81
39078--39399	79	4.1	79	92	2	531	47	4	17	30	1.69
44508--44601	46	2.0	46	84	8	120	54	5	13	26	1.61
44600--44634	5	6.8	5	87	6	52	77	0	0	22	0.78
44594--44636	11	3.9	11	81	9	52	74	0	0	25	0.82
44594--44636	16	2.6	17	82	10	63	74	0	0	25	0.82
44594--44634	21	1.9	22	95	5	75	75	0	0	24	0.80
46351--46531	98	1.8	98	82	5	231	23	21	20	33	1.97
47591--47663	24	2.9	25	81	6	76	17	27	20	34	1.95
47620--47678	24	2.5	24	100	0	118	11	32	25	30	1.92
47635--47714	24	3.2	24	79	6	79	18	26	21	33	1.96
47644--47830	50	3.7	50	76	1	187	19	25	17	37	1.93
47611--47892	124	2.3	124	81	2	307	19	26	17	37	1.93
47747--47854	24	4.4	24	74	4	99	19	29	15	35	1.93
47646--47829	100	1.8	100	82	2	235	19	25	17	38	1.93
63930--63969	19	2.0	21	90	9	66	15	37	0	47	1.45
64070--64132	13	4.8	13	100	0	126	47	7	38	6	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75080--75149	18	3.8	18	92	1	104	21	21	27	30	1.98
75896--75950	21	2.6	21	97	0	101	32	12	21	32	1.91
82723--82873	37	4.1	37	89	1	214	33	33	19	14	1.92
84290--84356	18	3.7	18	85	0	89	22	20	25	31	1.98
84290--84368	18	4.3	18	83	1	86	25	20	24	30	1.98
85114--85154	21	2.0	21	85	0	55	34	21	19	24	1.97
91272--91320	18	2.7	18	87	0	71	18	20	22	38	1.93
103089--103130	21	2.0	21	85	0	57	35	19	23	21	1.96
104658--104708	24	2.0	27	88	11	81	37	3	0	58	1.16
104956--105007	21	2.4	22	78	12	63	30	1	0	67	1.02
105113--105158	23	2.0	23	91	0	74	65	4	6	23	1.35
106502--106550	19	2.7	18	81	12	55	55	6	0	38	1.25
106554--106615	10	6.6	10	77	18	53	67	4	0	27	1.10
106554--106606	17	2.8	19	83	13	65	67	3	0	28	1.07
106553--106615	28	2.2	28	86	10	85	66	4	0	28	1.12
106775--106819	22	2.0	22	83	8	56	31	8	4	55	1.51
108396--108453	22	2.6	22	81	8	64	22	6	3	67	1.30
111063--111154	20	4.6	20	81	0	103	15	30	17	36	1.91
111066--111168	40	2.6	41	81	9	124	15	28	19	36	1.92
112114--112169	28	2.0	29	96	3	105	25	21	12	41	1.88
113455--113487	17	2.0	17	88	5	50	33	12	6	48	1.65
115977--116101	43	2.9	43	82	7	164	25	27	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117967--118044	32	2.4	30	76	17	77	55	1	7	35	1.37
119995--120144	41	3.7	41	81	0	158	20	23	17	38	1.93
120158--120258	40	2.5	39	82	9	116	24	17	16	40	1.90
128733--128766	18	1.9	17	88	5	50	73	0	23	2	0.97
152279--152446	61	2.8	60	88	0	264	43	14	13	29	1.83
153967--154114	26	5.7	26	88	0	179	33	12	23	29	1.92
153967--154111	78	1.9	78	88	0	218	34	11	24	29	1.91
160934--160977	13	3.8	12	85	11	56	79	2	18	0	0.83
160940--160977	6	6.2	6	82	17	51	78	2	18	0	0.86
165434--165463	14	2.2	14	94	5	53	36	10	23	30	1.87
168780--168878	26	3.8	26	90	2	146	29	18	26	26	1.98
169955--170072	51	2.3	52	78	5	134	42	7	23	26	1.81
175158--175204	14	3.4	14	84	0	67	36	0	29	34	1.58
183362--183588	120	1.9	120	98	0	436	25	24	19	30	1.98
183555--183622	34	2.0	34	100	0	136	35	20	11	32	1.89
190900--190986	42	2.1	42	80	8	97	29	13	11	44	1.79
199919--199972	24	2.2	24	77	6	56	46	9	0	44	1.35
201404--201586	40	4.6	40	77	2	170	32	15	21	30	1.94
201404--201586	80	2.3	80	83	3	242	32	15	21	30	1.94
201442--201624	80	2.3	80	81	5	201	33	16	21	28	1.95
201936--201968	2	16.5	2	100	0	66	51	0	0	48	1.00
210316--210534	106	2.1	106	90	1	341	39	9	7	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217563--217631	17	4.0	17	80	1	66	49	8	20	21	1.76
225929--226147	106	2.1	106	89	1	332	42	9	6	41	1.64
226911--227694	392	2.0	392	93	0	1327	36	16	14	32	1.89
227884--228033	40	3.8	40	89	0	219	33	20	22	24	1.97
231773--231818	17	2.6	17	86	3	56	45	13	21	19	1.84
231793--231836	17	2.6	16	83	16	54	43	9	25	22	1.82
231948--231994	21	2.3	20	85	3	58	4	25	12	57	1.54
249688--249739	12	3.9	12	75	20	50	76	9	11	1	1.09
253153--253224	36	2.0	36	97	0	135	50	15	8	26	1.72
253584--253622	21	1.9	20	89	5	60	2	25	5	66	1.25
269266--269328	17	3.6	17	78	2	63	46	11	19	23	1.82
276618--276664	21	2.2	21	85	7	60	38	12	19	29	1.89
279679--279713	16	2.1	18	89	10	56	40	5	14	40	1.69
281695--281736	21	2.0	22	90	4	68	26	33	14	26	1.94
292547--292616	36	1.9	36	88	0	104	20	15	34	30	1.93
292552--292637	36	2.4	36	82	2	91	20	16	33	29	1.95
293789--293835	17	2.8	17	83	0	58	53	10	21	14	1.71
296530--296570	21	1.9	21	85	5	55	36	24	12	26	1.91
296535--296577	21	2.0	21	81	0	50	37	23	13	25	1.92
303670--303739	21	3.3	21	65	21	56	30	20	18	31	1.96
303670--303765	42	2.3	42	87	5	133	31	18	19	30	1.96

Tables:   1

The End!