Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014624.1 Kokia drynarioides strain JFW-HI SEQ_129663, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17288
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:590 original size:16 final size:16

Alignment explanation


    Indices: 569--622  Score: 63
    Period size: 16  Copynumber: 3.4  Consensus size: 16

        559 TTGAATACTA

                            
        569 ATTACAGTTTTATTTC
          1 ATTACAGTTTTATTTC

                   *      * 
        585 ATTACAGCTTTATTCC
          1 ATTACAGTTTTATTTC

                  * *      *
        601 ATTACAATATTATTTT
          1 ATTACAGTTTTATTTC

                  
        617 ATTACA
          1 ATTACA

        623 ACACTATTCA


Statistics
Matches: 31,  Mismatches: 7, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  16   31  1.00

ACGTcount: A:0.31, C:0.15, G:0.04, T:0.50


Consensus pattern (16 bp):   
ATTACAGTTTTATTTC
Done.