genome.fa.s14629.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014629.1 Kokia drynarioides strain JFW-HI SEQ_129668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93069

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315--471	31	5.3	29	66	21	94	43	12	21	21	1.86
286--468	59	3.1	60	88	3	255	44	12	20	22	1.85
4804--4891	43	2.0	43	97	0	167	34	12	17	36	1.87
22627--22695	29	2.4	28	81	18	72	37	7	4	50	1.50
29856--29911	27	2.1	27	86	6	78	66	19	12	1	1.33
42779--42830	28	1.9	27	84	7	70	17	3	19	59	1.52
43531--43570	18	2.2	18	86	8	55	65	2	5	27	1.27
43889--43939	15	3.5	15	78	2	59	68	5	1	23	1.22
44141--44174	15	2.2	16	89	5	52	79	2	0	17	0.86
47771--47809	20	2.0	20	85	5	53	25	15	0	58	1.37
51796--51968	37	4.7	37	91	0	247	34	24	12	28	1.92
51798--52033	37	6.4	36	86	4	179	35	24	13	27	1.92
51946--52149	36	5.6	36	88	2	257	36	21	15	26	1.93
51946--52149	73	2.8	72	84	2	266	36	21	15	26	1.93
51946--52148	109	1.9	109	85	2	282	36	20	15	27	1.93
52072--52131	18	3.3	18	66	25	54	35	21	13	30	1.92
52090--52149	18	3.3	18	66	25	54	35	21	15	28	1.93
55261--55328	35	1.9	35	93	0	118	20	26	19	33	1.96
65453--65505	21	2.5	20	82	11	54	35	24	9	30	1.87
68337--68386	25	2.0	26	88	4	75	38	30	14	18	1.89
70768--70818	22	2.3	22	86	0	66	43	1	9	45	1.48
76643--76702	21	2.8	22	82	7	70	35	20	8	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77457--77649	51	3.8	51	91	2	298	29	22	14	33	1.94
83512--83543	16	2.0	16	93	0	55	53	6	3	37	1.42
83578--83622	21	2.1	21	100	0	90	26	26	20	26	1.99
83788--83833	14	3.2	14	81	3	56	58	0	0	41	0.98
84746--84804	29	2.0	29	100	0	118	42	13	0	44	1.44
86291--86397	39	2.9	37	85	4	135	42	9	14	33	1.77
86291--86416	36	3.5	34	82	9	135	42	7	14	34	1.75
86324--86416	36	2.7	36	86	6	140	41	6	16	35	1.74
86368--86471	55	1.9	55	93	0	181	41	6	16	35	1.75
86338--86506	91	1.9	90	93	3	295	41	7	17	34	1.76
86421--86552	34	3.9	34	85	2	174	43	9	15	31	1.77
87016--87061	16	2.8	17	80	9	60	76	4	6	13	1.14
88329--88369	17	2.4	17	100	0	82	24	41	17	17	1.89
89037--89141	40	2.6	40	90	0	174	41	21	18	18	1.90
89157--89249	38	2.3	40	85	5	127	35	18	26	19	1.95

Tables:   1

The End!