Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014630.1 Kokia drynarioides strain JFW-HI SEQ_129669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78145
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:2517 original size:13 final size:14
Alignment explanation
Indices: 2487--2517 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
2477 TTTCAGTACA
2487 TTGACATTTAACCT
1 TTGACATTTAACCT
2501 TTGACATTTAA-CT
1 TTGACATTTAACCT
2514 TTGA
1 TTGA
2518 TTGCATTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (14 bp):
TTGACATTTAACCT
Found at i:18377 original size:43 final size:42
Alignment explanation
Indices: 18325--18414 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 42
18315 ACTTAAAATA
18325 AATAAATTTAGTCAAAATAAAATTAAGAAAATAACAACTTTG
1 AATAAATTTAGTCAAAATAAAATTAAGAAAATAACAACTTTG
18367 AATATAATTTAGTCAAAATAAAATTAAGAAAATAACAACTTTG
1 AATA-AATTTAGTCAAAATAAAATTAAGAAAATAACAACTTTG
18410 AATAA
1 AATAA
18415 GCTTATTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 5 0.11
43 42 0.89
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.29
Consensus pattern (42 bp):
AATAAATTTAGTCAAAATAAAATTAAGAAAATAACAACTTTG
Found at i:21770 original size:42 final size:42
Alignment explanation
Indices: 21717--21818 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 42
21707 TATGGATTAG
* * * * *
21717 GGGTAAGAGATTGAATGGTGTCTTCAATTTTCCCTCTTGTTA
1 GGGTAAAAGATTGGATGGAGTCTTCAATCTGCCCTCTTGTTA
*
21759 GGGTAAAAGATTGGATGAAGTCTTCAATCTGCCCTCTTGTTA
1 GGGTAAAAGATTGGATGGAGTCTTCAATCTGCCCTCTTGTTA
21801 GGGTAAAAGATTGGATGG
1 GGGTAAAAGATTGGATGG
21819 GATGATTTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (42 bp):
GGGTAAAAGATTGGATGGAGTCTTCAATCTGCCCTCTTGTTA
Found at i:22906 original size:22 final size:22
Alignment explanation
Indices: 22881--22948 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
22871 CTTTTTCAGG
22881 TTTTCAACTCAAACTTTTGGAT
1 TTTTCAACTCAAACTTTTGGAT
* * ** ** *
22903 TTTTTAGC-C-GCCTTTTCAAG
1 TTTTCAACTCAAACTTTTGGAT
22923 TTTTCAACTCAAACTTTTGGAT
1 TTTTCAACTCAAACTTTTGGAT
22945 TTTT
1 TTTT
22949 TTAGGCAAAA
Statistics
Matches: 30, Mismatches: 14, Indels: 4
0.62 0.29 0.08
Matches are distributed among these distances:
20 12 0.40
21 2 0.07
22 16 0.53
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.49
Consensus pattern (22 bp):
TTTTCAACTCAAACTTTTGGAT
Found at i:28538 original size:24 final size:24
Alignment explanation
Indices: 28504--28550 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
28494 ATTCATCTTT
*
28504 TATTAATTTGCTCTGACA-TTTTA
1 TATTAATTTGCACTGACAGTTTTA
28527 TATTACATTTGCACTGACAGTTTT
1 TATTA-ATTTGCACTGACAGTTTT
28551 TACTCTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.49
Consensus pattern (24 bp):
TATTAATTTGCACTGACAGTTTTA
Found at i:36671 original size:6 final size:6
Alignment explanation
Indices: 36648--36696 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
36638 AATTCATATA
* * *
36648 ACTTTC AATTCC AATTTC ACTTTC ACTTTC ACTTTC ACTTTC ACTTTC
1 ACTTTC ACTTTC ACTTTC ACTTTC ACTTTC ACTTTC ACTTTC ACTTTC
36696 A
1 A
36697 ATTTTGATCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (6 bp):
ACTTTC
Found at i:36671 original size:18 final size:18
Alignment explanation
Indices: 36648--36700 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
36638 AATTCATATA
* *
36648 ACTTTCAATTCCAATTTC
1 ACTTTCACTTTCAATTTC
*
36666 ACTTTCACTTTCACTTTC
1 ACTTTCACTTTCAATTTC
36684 ACTTTCACTTTCAATTT
1 ACTTTCACTTTCAATTT
36701 TGATCACAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (18 bp):
ACTTTCACTTTCAATTTC
Found at i:42489 original size:6 final size:6
Alignment explanation
Indices: 42464--42502 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
42454 ACAAATCATA
* * *
42464 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
42503 ATTTTGATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (6 bp):
TCACTT
Found at i:58689 original size:15 final size:15
Alignment explanation
Indices: 58669--58697 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
58659 AACATACATA
58669 CAATAAAATGCAAAG
1 CAATAAAATGCAAAG
58684 CAATAAAATGCAAA
1 CAATAAAATGCAAA
58698 AAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14
Consensus pattern (15 bp):
CAATAAAATGCAAAG
Found at i:65569 original size:59 final size:58
Alignment explanation
Indices: 65439--65570 Score: 165
Period size: 59 Copynumber: 2.2 Consensus size: 58
65429 TCAAAATGGG
* * * * *
65439 ATTTTTAGCAAGTTTAAGGTTTAAAATGCAAATTTGGAAAAGTTTAAGGTTAAAATGT
1 ATTTTTGGAAAGTTTAAGGGTTAAAATGCAAATTTGGAAAAGTTTAAGGTCAAAATAT
* * * *
65497 AATTTTGGAAAAGTTTTAGGGTTAAAATGTAATTTTGGAAAAGTTTAAGGGTCAAAATAT
1 ATTTTTGG-AAAGTTTAAGGGTTAAAATGCAAATTTGGAAAAGTTTAA-GGTCAAAATAT
65557 ATTTTTGGAAAGTT
1 ATTTTTGGAAAGTT
65571 CAGGGACCTC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
58 6 0.10
59 40 0.65
60 16 0.26
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (58 bp):
ATTTTTGGAAAGTTTAAGGGTTAAAATGCAAATTTGGAAAAGTTTAAGGTCAAAATAT
Found at i:65570 original size:29 final size:30
Alignment explanation
Indices: 65448--65567 Score: 170
Period size: 30 Copynumber: 4.0 Consensus size: 30
65438 GATTTTTAGC
* * *
65448 AAGTTTAAGGTTTAAAATGCAAATTTGGAA
1 AAGTTTAAGGGTTAAAATGTAATTTTGGAA
65478 AAGTTTAA-GGTTAAAATGTAATTTTGGAA
1 AAGTTTAAGGGTTAAAATGTAATTTTGGAA
*
65507 AAGTTTTAGGGTTAAAATGTAATTTTGGAA
1 AAGTTTAAGGGTTAAAATGTAATTTTGGAA
* * *
65537 AAGTTTAAGGGTCAAAATATATTTTTGGAA
1 AAGTTTAAGGGTTAAAATGTAATTTTGGAA
65567 A
1 A
65568 GTTCAGGGAC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
29 25 0.31
30 56 0.69
ACGTcount: A:0.41, C:0.02, G:0.21, T:0.37
Consensus pattern (30 bp):
AAGTTTAAGGGTTAAAATGTAATTTTGGAA
Found at i:66429 original size:3 final size:3
Alignment explanation
Indices: 66423--66456 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
66413 TTTTGTTTTC
66423 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
66457 GCTAATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:67917 original size:29 final size:28
Alignment explanation
Indices: 67885--68027 Score: 99
Period size: 30 Copynumber: 4.8 Consensus size: 28
67875 GTTTCGGAGG
67885 ATTTAGGGTCAAAATGTTATTTTTGGAAA
1 ATTTAGGGTCAAAATG-TATTTTTGGAAA
**
67914 ATTTAGGGGGTC-AAATGTGATTTTTATAAA
1 ATTTA--GGGTCAAAATGT-ATTTTTGGAAA
* * * * *
67944 GTTCAAGGGTTAAAATGAAATTTTGGAAA
1 ATT-TAGGGTCAAAATGTATTTTTGGAAA
* * *
67973 AGTTTAAGGGTTAATATGTAATTTTGGAAA
1 A-TTT-AGGGTCAAAATGTATTTTTGGAAA
*
68003 AGTTTGAGGGTCAAAATATATTTTT
1 A-TTT-AGGGTCAAAATGTATTTTT
68028 AAAATGTTCG
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
29 18 0.20
30 65 0.73
31 6 0.07
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (28 bp):
ATTTAGGGTCAAAATGTATTTTTGGAAA
Found at i:67960 original size:30 final size:30
Alignment explanation
Indices: 67889--68006 Score: 105
Period size: 30 Copynumber: 3.9 Consensus size: 30
67879 CGGAGGATTT
* * *
67889 AGGGTCAAAATGTTATTTTTGGAAAA-TTTA
1 AGGGTTAAAATG-TAATTTTGGAAAAGTTCA
* * * * *
67919 GGGGGTCAAATGTGATTTT-TATAAAGTTCA
1 AGGGTTAAAATGTAATTTTGGA-AAAGTTCA
* *
67949 AGGGTTAAAATGAAATTTTGGAAAAGTTTA
1 AGGGTTAAAATGTAATTTTGGAAAAGTTCA
*
67979 AGGGTTAATATGTAATTTTGGAAAAGTT
1 AGGGTTAAAATGTAATTTTGGAAAAGTT
68007 TGAGGGTCAA
Statistics
Matches: 68, Mismatches: 17, Indels: 6
0.75 0.19 0.07
Matches are distributed among these distances:
28 1 0.01
29 8 0.12
30 58 0.85
31 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.37
Consensus pattern (30 bp):
AGGGTTAAAATGTAATTTTGGAAAAGTTCA
Found at i:68007 original size:30 final size:30
Alignment explanation
Indices: 67941--68019 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
67931 TGATTTTTAT
*
67941 AAAGTTCAAGGGTTAAAATGAAATTTTGGA
1 AAAGTTTAAGGGTTAAAATGAAATTTTGGA
* *
67971 AAAGTTTAAGGGTTAATATGTAATTTTGGA
1 AAAGTTTAAGGGTTAAAATGAAATTTTGGA
* *
68001 AAAGTTTGAGGGTCAAAAT
1 AAAGTTTAAGGGTTAAAAT
68020 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.33
Consensus pattern (30 bp):
AAAGTTTAAGGGTTAAAATGAAATTTTGGA
Found at i:68925 original size:3 final size:3
Alignment explanation
Indices: 68919--68973 Score: 92
Period size: 3 Copynumber: 18.3 Consensus size: 3
68909 ATTATTATTT
* *
68919 TCA TCA TCC TCA TCC TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
68967 TCA TCA T
1 TCA TCA T
68974 TATTATTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:68978 original size:3 final size:3
Alignment explanation
Indices: 68972--69004 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
68962 CATCATCATC
68972 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
69005 CATGCAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:70267 original size:84 final size:85
Alignment explanation
Indices: 70115--70282 Score: 225
Period size: 84 Copynumber: 2.0 Consensus size: 85
70105 AACTTTATCT
*
70115 TTTGGTTCACTTCTCTGTATCTCATTAGGAAGAGGACCACTTCATTGTCTTGATCCACTTCTCTG
1 TTTGGTTCACTTCTCTGTATCTCATTAGGAAGAGGACCACTTCATTGTCTTGACCCACTTCTCTG
70180 TATCTCATCAAGAAGATGGA
66 TATCTCATCAAGAAGATGGA
* * * ** *
70200 TTTGG-TCTACTTCTTTGTATCTCGTTA-GAAGATGACTGCTTGATTG-CTTTGACCCACTTCTC
1 TTTGGTTC-ACTTCTCTGTATCTCATTAGGAAGAGGACCACTTCATTGTC-TTGACCCACTTCTC
*
70262 TGTATCTCATCAGGAAGATGG
64 TGTATCTCATCAAGAAGATGG
70283 GGGTTTTAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
83 1 0.01
84 50 0.68
85 22 0.30
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (85 bp):
TTTGGTTCACTTCTCTGTATCTCATTAGGAAGAGGACCACTTCATTGTCTTGACCCACTTCTCTG
TATCTCATCAAGAAGATGGA
Found at i:70418 original size:124 final size:123
Alignment explanation
Indices: 70198--70519 Score: 484
Period size: 124 Copynumber: 2.6 Consensus size: 123
70188 CAAGAAGATG
* * * * **
70198 GATTTGGTCTACTTCTTTGTATCTCGTTA-GAAGATGACTGCTTGATTGCTTTGACCCACTTCTC
1 GATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATGACTGCCTCATTG-TTTTAATCACTTCTC
* * * *
70262 TGTATCTCATCAGGAAGATGGGGGTTTTAAGTTTCACTCACATTGAGCTTGGCTTCATT
65 TGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATC
* *
70321 GATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATAACCGCCTCATTGTTTTAATCTACTTCTC
1 GATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATGACTGCCTCATTGTTTTAATC-ACTTCTC
70386 TGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATC
65 TGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATC
* *
70445 GATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTTAATACACTTCTT
1 GATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATGACTGCCTCATTGTTTTAAT-CACTTCTC
70510 TGTATCTCAT
65 TGTATCTCAT
70520 TTGTAAGACG
Statistics
Matches: 180, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
123 33 0.18
124 146 0.81
125 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.40
Consensus pattern (123 bp):
GATTTGGTCTACTTCTTTGTATCTCATTAGGAAGATGACTGCCTCATTGTTTTAATCACTTCTCT
GTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATC
Found at i:70601 original size:85 final size:85
Alignment explanation
Indices: 70446--70604 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
70436 CGCTTCATCG
* * * * *
70446 ATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTTAATACACTTCTTT
1 ATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTGAATACACTTCTCT
*
70511 GTATCTCATTTGTAAGACGA
66 ATATCTCATTTGTAAGACGA
* * * *
70531 ATTTGGT-TCACTTCTCTATATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAGT-CATTTCT
1 ATTTGGTCT-ACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTG-TTTGAATACACTTCT
70594 CTATATCTCAT
64 CTATATCTCAT
70605 CAGAAAGATG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 1 0.02
85 56 0.90
86 5 0.08
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (85 bp):
ATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTGAATACACTTCTCT
ATATCTCATTTGTAAGACGA
Found at i:70615 original size:209 final size:209
Alignment explanation
Indices: 70321--70775 Score: 639
Period size: 209 Copynumber: 2.2 Consensus size: 209
70311 TGGCTTCATT
* * * *
70321 GATTTGG-TCTACTTCTTTGTATCTCATTAGGAAGATAACCGCCTCATTGTTTTAATCTACTTCT
1 GATTTGGTTC-ACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTGAATCTACTTCT
* * *
70385 CTGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATCGATTT
65 CTATATCTCATCAAGAAGATGGGGCTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATCAATTT
* * * * *
70450 GGTCTACTTCTTTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTTAATACACTTCTTTGTAT
130 GGTCTACTTCTCTATATCTCATCAGGAAGATGACTGCCTCATTATTTTAATACACTTCTCTATAT
** *
70515 CTCATTTGTAAGACGA
195 CTCATCAGGAAGA-GA
* * * * *
70531 -ATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGACCGCTTTATTGCTTTGAGTC-ATTTCT
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTG-TTTGAATCTACTTCT
70594 CTATATCTCATC-AGAAAGATGGGGCTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATCAATT
65 CTATATCTCATCAAG-AAGATGGGGCTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATCAATT
*
70658 TGGTCTACTTCTCTATATCTCATCAGGAAGATGACTGCCTCATTATTTTAATCCACTTCTCTATA
129 TGGTCTACTTCTCTATATCTCATCAGGAAGATGACTGCCTCATTATTTTAATACACTTCTCTATA
*
70723 TCTCATCAGGAAGATA
194 TCTCATCAGGAAGAGA
*
70739 GATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATG
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATG
70776 GGGGTTTGAA
Statistics
Matches: 217, Mismatches: 24, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
208 3 0.01
209 206 0.95
210 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (209 bp):
GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTGAATCTACTTCTC
TATATCTCATCAAGAAGATGGGGCTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATCAATTTG
GTCTACTTCTCTATATCTCATCAGGAAGATGACTGCCTCATTATTTTAATACACTTCTCTATATC
TCATCAGGAAGAGA
Done.