genome.fa.s14631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014631.1 Kokia drynarioides strain JFW-HI SEQ_129670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61769

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2614--2717	29	3.5	28	68	13	75	37	3	24	34	1.74
2762--2875	30	3.8	30	74	12	101	38	2	23	35	1.69
2761--2855	29	3.2	29	77	11	86	41	3	23	32	1.70
2616--2849	117	2.0	118	85	5	314	37	2	26	33	1.72
2613--2865	59	4.3	56	75	11	206	37	3	25	34	1.72
4642--4691	16	2.9	17	82	5	57	42	8	4	46	1.52
4643--4697	16	3.3	16	82	5	56	43	7	3	45	1.49
4669--4714	16	2.9	16	86	0	56	52	6	2	39	1.40
4682--4746	6	10.8	6	71	12	53	56	3	1	38	1.24
4683--4746	20	3.6	18	82	12	78	57	3	1	37	1.24
4727--4772	22	2.1	22	88	8	67	56	10	2	30	1.46
4727--4772	21	2.1	23	84	15	62	56	10	2	30	1.46
12975--13008	17	2.0	17	88	0	50	64	5	5	23	1.38
18883--18928	25	1.9	25	86	8	69	34	4	6	54	1.46
19309--19347	14	2.7	15	80	8	53	25	7	10	56	1.59
19991--20020	13	2.2	14	94	5	53	16	0	0	83	0.65
20024--20055	14	2.4	13	90	10	55	25	3	0	71	1.00
22719--22761	5	8.2	5	85	10	59	23	4	0	72	1.04
24586--24631	25	1.9	25	86	8	69	34	4	6	54	1.46
25700--25742	18	2.3	19	88	8	61	23	2	2	72	1.08
26832--26913	28	2.9	28	78	3	85	36	2	4	56	1.34
26865--26919	17	3.2	17	86	2	74	41	1	3	52	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26970--27045	40	1.9	40	94	0	134	43	26	13	17	1.85
28594--28665	30	2.4	30	78	0	81	38	25	2	33	1.70
28599--29133	29	18.3	29	71	13	225	34	26	4	34	1.77
37873--37917	22	2.0	24	86	8	67	35	0	20	44	1.51
38320--38353	17	2.0	17	88	0	50	64	5	5	23	1.38
39187--39240	23	2.3	23	96	0	99	24	24	22	29	1.99
42497--42530	16	2.2	16	94	5	61	20	0	11	67	1.21
42892--42966	21	3.5	20	78	21	73	73	0	5	21	1.03
48296--49278	489	2.0	489	91	1	1576	31	17	17	33	1.93
56818--56863	23	2.0	23	100	0	92	56	8	21	13	1.63

Tables:   1

The End!