genome.fa.s14633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014633.1 Kokia drynarioides strain JFW-HI SEQ_129672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24462

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1149--1392	61	4.1	60	77	11	241	28	15	14	40	1.87
1171--1428	121	2.2	118	83	7	317	26	15	16	41	1.88
1168--1422	61	4.3	61	77	13	239	27	15	16	41	1.88
2286--2407	30	4.1	30	84	0	154	61	3	7	27	1.38
4940--5460	94	5.5	94	94	0	889	48	3	5	41	1.44
5568--5603	17	2.1	17	100	0	72	38	5	0	55	1.23
7111--7161	26	2.0	26	84	7	68	31	3	0	64	1.11
7970--8188	59	3.6	58	81	6	240	39	16	16	26	1.90
7970--8188	60	3.7	59	80	6	244	39	16	16	26	1.90
10962--11213	29	8.7	29	70	16	148	31	3	29	35	1.75
10962--11132	28	5.9	28	72	14	125	30	2	30	36	1.72
10962--11223	58	4.5	59	77	10	227	31	3	29	35	1.75
10992--11192	30	6.9	29	68	22	93	31	3	29	34	1.76
13854--13994	39	3.6	39	79	7	169	21	17	36	23	1.94
14049--14243	101	1.9	101	84	0	255	31	15	15	37	1.89
14348--14626	100	2.8	101	84	1	335	16	25	17	40	1.90
14440--14597	50	3.1	50	72	12	133	15	24	19	39	1.91
14450--14617	51	3.3	50	73	10	144	14	25	18	41	1.89
15815--15885	26	2.7	25	78	10	70	2	16	4	76	1.07
17064--17381	157	2.0	156	98	0	609	39	11	25	23	1.88
21674--21993	30	10.9	28	71	15	175	31	1	28	38	1.66
21615--21993	29	13.0	29	71	17	209	31	2	27	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21637--21982	59	5.9	58	76	8	281	31	2	28	38	1.68
23705--23733	13	2.3	13	94	5	51	37	10	17	34	1.84

Tables:   1

The End!