Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014640.1 Kokia drynarioides strain JFW-HI SEQ_129679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4452
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35


Found at i:2874 original size:38 final size:38

Alignment explanation


    Indices: 2832--2918  Score: 120
    Period size: 38  Copynumber: 2.3  Consensus size: 38

       2822 TTGGTACTAA

                    *                         *   
       2832 TGTCGTTGTATGAGTATTTTCAAATTTGATTCCAGGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGATTCCAAGAT

                 *                      *  *      
       2870 TGTCGCTGCATGAGTATTTTCAAATTTGCTTTCAAGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGATTCCAAGAT

                  *    
       2908 TGTCGTCGCAT
          1 TGTCGTTGCAT

       2919 CTGACAACTG


Statistics
Matches: 42,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  38   42  1.00

ACGTcount: A:0.22, C:0.15, G:0.21, T:0.43


Consensus pattern (38 bp):   
TGTCGTTGCATGAGTATTTTCAAATTTGATTCCAAGAT
Done.